KEGG   Saprolegnia parasitica: SPRG_20734
Entry
SPRG_20734        CDS       T04137                                 
Name
(RefSeq) hypothetical protein
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
spar  Saprolegnia parasitica
Pathway
spar03020  RNA polymerase
spar03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SPRG_20734
  09124 Replication and repair
   03420 Nucleotide excision repair
    SPRG_20734
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spar03021]
    SPRG_20734
   03400 DNA repair and recombination proteins [BR:spar03400]
    SPRG_20734
Transcription machinery [BR:spar03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     SPRG_20734
DNA repair and recombination proteins [BR:spar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      SPRG_20734
SSDB
Motif
Pfam: RNA_POL_M_15KD IBR zinc_ribbon_9 Zn_ribbon_recom zf-LITAF-like CpXC MCM_OB zinc_ribbon_10 HypA DUF6510 C1_1
Other DBs
NCBI-GeneID: 24141782
NCBI-ProteinID: XP_012204024
UniProt: A0A067C4A8
Position
Unknown
AA seq 128 aa
MSTAGMRFCKECNNMLYPSQDRELKRLTFTCRNCGHNEEVPESCIYANELVKDSRVQLDV
LPEDIIDDPTLQRDYDVACPECGGQGAAFIRSHDGVKQSTLALIWICLNRDCQLDEHGNR
LPTHRWMD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcgaccgcggggatgcgcttctgcaaggaatgcaacaacatgttgtaccctagccaa
gaccgcgagctcaagcggctcacgttcacgtgccgcaactgcggccacaacgaagaggtg
cccgagtcgtgcatctacgccaacgagctcgtcaaggactcgcgcgtccagctcgatgtg
ctgccggaagacatcattgacgacccgaccctccagcgcgactacgacgtcgcgtgcccc
gagtgcggcggccaaggcgcggcgttcatccggtcccatgacggcgtgaagcagtcgacg
ctagcgctcatttggatttgcctcaaccgtgactgccagctcgacgagcatggcaaccga
ctgcccacgcaccgatggatggattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (40)   

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