KEGG   Sphingobium sp. YG1: YGS_C1P0807
Entry
YGS_C1P0807       CDS       T05858                                 
Name
(GenBank) bifunctional non-homologous end joining protein LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
spyg  Sphingobium sp. YG1
Pathway
spyg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spyg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    YGS_C1P0807
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spyg03400]
    YGS_C1P0807
Enzymes [BR:spyg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     YGS_C1P0807
DNA repair and recombination proteins [BR:spyg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     YGS_C1P0807
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S CATASP
Other DBs
NCBI-ProteinID: BBC99551
UniProt: A0A2Z6AC55
Position
1:852848..853798
AA seq 316 aa
MAINSLREDKKPEAVVLEKPAAQLSSPVAIRNRERVIFPESSITKGALADYFAQIAPLML
PWAGSRPISLVRCTQGRAKKCFFQKHDAESFGDAVRHIGITEKVCHEEAYLYIDTPEGLL
TCVQMGTIEFHGWGVRIEDVEKADRLVFDVDPDEGLDFEAVRSAAFQFRDILASIGLATF
PMLTGGKGVHVTAPLTPRADWAEIKDFAHRLAKAVAQNDPEHFTAALPKAQRKGRIFVDY
LRNQRGATAVMPYSARARPGAPVAAPLSWKEMETIDKPSHFTIADGKALAKRATSKALSG
WGRADQSCPTFENRHL
NT seq 951 nt   +upstreamnt  +downstreamnt
gtggcaatcaacagcctacgcgaagacaagaagcctgaggcggtggttctggaaaagccg
gcggcgcagctctcgtcgccggtcgccatcagaaaccgagagcgggtcatctttcccgaa
agcagcatcaccaagggcgcgcttgcagactattttgcgcagatcgcgcccctgatgctt
ccctgggctgggtcgcgaccgatcagcctcgtgcgctgtacgcaggggcgggcgaagaaa
tgcttcttccagaagcatgatgccgagtcctttggcgatgcggtgcgccacatcggcatc
acggagaaggtctgtcatgaggaagcctatctttatatagatacgcctgagggccttctg
acctgcgtccagatgggtacgatcgaatttcatggctggggcgtgcggatcgaagatgtc
gagaaggccgatcgcctggtcttcgacgttgatcccgatgaggggctggacttcgaagcc
gtgcgatcggctgccttccagtttcgcgacatattggcctcgatcggccttgcgaccttt
ccgatgctgaccggtggaaagggcgtgcatgtgacagcgccgctgacgccgcgggccgac
tgggccgagatcaaggacttcgcccaccgtctggcgaaagccgtggcgcaaaatgatccg
gagcatttcaccgcagcgctccccaaggcccagcgcaagggccgcatcttcgtcgattat
ctgcgtaaccagcgcggcgcgacggcggtcatgccttacagcgcccgcgcccgtcccggc
gccccggtcgcggcgccgcttagctggaaggaaatggagacgatcgacaagccctcccac
ttcaccatcgctgatggcaaagcgctggcgaagcgagcgacttcaaaggctctgtccggc
tggggccgcgccgatcaatcgtgcccaacctttgaaaatcgccacctataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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