KEGG   Sphingobium sp. YG1: YGS_C1P1080
Entry
YGS_C1P1080       CDS       T05858                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
spyg  Sphingobium sp. YG1
Brite
KEGG Orthology (KO) [BR:spyg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spyg03032]
    YGS_C1P1080
   03400 DNA repair and recombination proteins [BR:spyg03400]
    YGS_C1P1080
Enzymes [BR:spyg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     YGS_C1P1080
DNA replication proteins [BR:spyg03032]
 Prokaryotic type
  DNA Topoisomerases
   YGS_C1P1080
DNA repair and recombination proteins [BR:spyg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      YGS_C1P1080
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom Toprim_4 SpoIIE
Other DBs
NCBI-ProteinID: BBC99824
UniProt: A0A2Z6AD01
Position
1:1162319..1164916
AA seq 865 aa
MQLVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLPAKDGSVDPDDGFAMSWENYGDKGK
QLKAIADASKKATRLILATDPDREGEAISWHVQEVLRAKKALPSVVERVTFNAITKAAVL
DAMAKPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE
REIESFTPQEYWSVAAEMEQGGQGFTARLVRWKGEKIERLTIGKEGDAMAAKADVEAGRF
TVDKVETKPVSRNPPAPFTTSTLQQEAARKLGFSASHTMRIAQQLYEDGAITYMRTDGVQ
MDGSAISAARKAIAERYDGGYLPEKPRQYQTKAKNAQEAHEAIRPTEFNRDKVGSGDHAR
LYDLIFKRALASQMASARLERTTIDLVEQTGQHALRATGQVVIFPGFLALYEEGRDDSDD
DDSKLLPRMSEGDAPAKKKVTADQHFTQPPPRYSEASLVKRLEELGIGRPSTYASTLQVL
KDRDYVRIEKNRFFAEESGRLVTAFLERFFERYVSYDFTAGLEDELDDISGGRAQWQAVL
EAFWRDFKPKTAEIMEQKPSDITAELDKFLEPMLFPPKADGSNPRACPLCADGQLSLRGG
RFGAFIACSNYPECKYTRKFGQPGGSEGADSGPEVLGQHPETGQDIVRKSGRFGPYIEMG
EGKEAKRGSIPKDLPDGEMTLDWAVKLLSLPREVGLHPETGKPIVANIGRFGPYLLHDGK
YGRLANTAEIFEVGMNSAVVKLAEAANRGGRSSGGREPLKILGAHPRTEAEIKLMEGRYG
AYVTDGTTNATLPKTVDKDQLTLEEAAQLIDARAAAAPAKKGKKAPAKKKAAPKKDAAEK
KPAAKKPAAKKAPAKKKAAPAETAE
NT seq 2598 nt   +upstreamnt  +downstreamnt
atgcaacttgtcatcgtcgaatcgcccgccaaggcgaagaccatcgagaaatatctgggc
ggcgatttccacgtcctcgccagctacggtcatattcgcgacctgcccgccaaggacggg
tcggtggacccggacgacggttttgccatgtcgtgggaaaattatggcgacaagggcaag
cagctgaaagccattgccgacgcgtccaagaaggcgacgcgattgatcctggcgactgac
cctgatcgcgaaggggaagcgatcagctggcatgtgcaggaagtgctgcgcgccaagaag
gcgctgccgtcggtcgtggagcgggtgacgttcaacgccattaccaaggccgcagtgctg
gacgcgatggccaagccccgcgcgctggacgaagatctgatcgacgcgtaccgcgcgcgc
cgcgcgctcgactatctggtgggcttcaccctgtcgccggtgctgtggcgcaaactgcct
ggcgcgaagtcggccggtcgtgtgcaatcggtcgctttgcggctggtggtggagcgcgag
cgtgagatcgagagctttaccccgcaggaatattggtcggtcgcggccgagatggagcag
ggcgggcagggcttcaccgcgcgcctcgtccgctggaagggcgagaagatcgagcgcctg
accatcggcaaggaaggcgacgccatggcggccaaggccgatgtggaagccgggcgcttt
accgtcgacaaggtcgagacgaagccggtcagccgcaatcctcctgcgccgttcacgacg
tcgaccttgcagcaggaagctgcgcgcaagctgggtttctccgccagccacacgatgcgg
atcgcgcagcagctgtatgaagacggcgcgatcacttacatgcgtaccgacggcgtgcag
atggacggcagcgccatttccgccgcgcgcaaggctatcgcggaacgctatgacggcggt
tacctgcccgaaaagccgcgccagtatcagaccaaggcgaagaatgcgcaggaagcgcat
gaggccatccgtccgaccgagttcaaccgcgacaaggtgggcagcggcgatcatgcgcgg
ctgtacgacctgatcttcaagcgggcgctggcgagccagatggcgtccgcgcggctggaa
cgcacgacgatcgatctggtcgaacagaccggccagcatgcgctgcgcgccaccggacag
gtggtgatcttccccggcttcctcgccctgtacgaggaaggtcgcgacgacagcgatgac
gacgacagcaagctgctgccgcgcatgagcgagggagatgcgccggccaagaagaaggtc
acggccgatcagcatttcacccagccaccgccgcgctattccgaagcgtcgctagtcaag
cgcctggaagaattggggatcgggcgtccgtccacctatgcgtcgacgcttcaggtgctg
aaagaccgcgactatgtgcggatcgagaagaaccgcttcttcgccgaggaaagcggacgg
ctggtgacggcgtttctggaacgcttcttcgaacgctatgtgtcctatgatttcacggcg
gggctggaagacgagctggacgatatttccggcggccgtgcccagtggcaggccgtgctg
gaagccttctggcgcgatttcaagcctaagacggccgagatcatggagcagaagccgtcc
gacatcacggcggagctggacaagtttctggagccgatgctgtttccgcccaaggcagac
ggcagcaatccgcgtgcctgcccgctgtgcgcggatgggcaattgtcgctgcgtggcggt
cggttcggtgcgttcattgcctgctccaactatccggagtgcaaatatacccgcaaattc
ggtcagccgggcggcagcgaaggtgcggatagcggaccggaggtgctgggccagcatccc
gaaacggggcaggatatcgtcaggaagtccggccgcttcggcccctatatcgaaatggga
gagggcaaggaggccaagcgtggctccattcccaaggatctgcccgatggcgagatgacg
ctggactgggcggtcaagctgttgagcctgccgcgtgaggtcggcctgcatccggagacg
ggcaagccgatcgtggccaatatcgggcgctttggcccctatctgctgcatgacggcaaa
tatgggcgtctggcgaatacggccgagattttcgaggtcggcatgaacagcgccgtcgtc
aagctggccgaagcggcgaaccggggcggccggtcgagcggcgggcgcgagccgctgaag
atactgggcgcgcatccgcgtaccgaggccgagatcaagctgatggaaggccgttatggc
gcctacgtcaccgatggcacgaccaatgcgacgctgcccaagacggtggacaaggaccag
ctgacgctggaggaagcggcgcagttgatcgacgcgcgcgccgcagcggcaccggcgaag
aagggcaagaaggccccagccaaaaagaaggccgcgcccaaaaaggatgcggctgagaag
aagcccgcggccaagaagcctgctgccaagaaggcaccggctaagaagaaagctgcgccg
gccgaaacggccgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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