KEGG   Salpingoeca rosetta: PTSG_08172
Entry
PTSG_08172        CDS       T04136                                 
Name
(RefSeq) collagen type III alpha 1
Organism
sre  Salpingoeca rosetta
SSDB
Motif
Pfam: DERM Collagen
Other DBs
NCBI-GeneID: 16071757
NCBI-ProteinID: XP_004991196
UniProt: F2UI75
Position
Unknown
AA seq 1706 aa
MLLARLVLVLVASHCLCPAVAQPSPPSGWTDYINEYDEELDFTCAPGNVLSGLLSYHDNN
KEDRRWAFTCKEAELFEHWESGWINNFDAPASITCPSGFALTGLRSYHDSNNEDRRSQAR
CQRFTSPLAYETSCAWTNYINTFDDPLSWSVSSTRVIRGFGSYHSNNNEDRRFKFLHCGV
SCFQPAVQSDAQCECTSDYFKNHGTCQQIPIGAPGPKGFTGDTGAKGPQGPQGARGPQGA
PGQDGAVGAKGIKGDMGAPGPAGPQGDQGSPGPIGPQGPVGVPGLQGVKGPQGLPGPQGD
QGIKGVQGDPGPQGSPGPSGIQGDKGPVGDIGLPGPQGIPGPKGPTGPVGVRGLKGPMGD
PGPIGVQGDVGAQGPQGIKGLQGSQGPQGLKGAQGPQGDPGLQGVQGDKGTTGDQGPVGP
KGPRGEDINPALIQHLQSNISIEASQTSDAAESLNADISSRIVNTSLTTDELMRSAISHE
TQRQAAARSMLSLQISTDQAALSSEVQRATQAESSLSVSVAGLSGAVVGGVSSVSQMISA
MDSGAVAREASLHVRASNERIRADSAHASLESQLQQQASAVAAADARARSTEDMLASSLS
LQVTSSISGEATTAQNVSSLAALAHARQLSLQSDISSATQEAGHQESSLQRQAESLVSAL
STEETRRVQASSSLASSILARRSGAMATESSLAAAISAQRTSTGTSISSLTTALSSAASL
GQQADDSLASLLSATANAAVSRETSLQHTLDSAVSLASSAEATLDRELSIDVSRAVSAEA
SISTAVQDRISTAKAEEAALDSALQSLHDVVRVSNANVSLQLQAAQSRAVREESRLSAAV
VSEANRAEHARADVASSLSSEHVRALSAVSSLNAAGHDAMTSAQSSEAHVSSAITAEAGR
AQSREEIVSAAISAHTVSRLSAQGVLSSSITAASSAARVNASQLRANVAALSSTLHQQHS
QLETSFAIVASDTSTALSSLEVFRTAVDTSAVSRATSIAADISAEQSRSSAQHASLNSQL
LTAIARADSAQAALRVEEQGAASSASTAASSLAVAAEQERARAVNRTLELNSQVLQEQSR
VQVAHASVAVSLAQVSSEASALAATHGNFVSSEQSRGADTRASIATALSRDTQTLHAVDA
SLETFISDASQQLITADQQLSTELSGVQQTRLAADAALREHLTFTHSTLSTMVAVEADKA
VSREQRVLGRHAAVAQELKTTTVKAIIANDVACTLETCNSQKIVMCPSAAHPNAGATTGL
VQDLLLAFQANPERWVLDTSRQPKPSTIGLQDLRIPRAYIRTSRQDDACLEFDVDVGSEA
AYTADYTAPAQQQQQQQRRRRRRSVGDVRAPGTDSTGGADGAGGADGASSSGMEYKNSNH
QQQLRDQLSQQEQQQSVARSRRVAFVSDDDLAEWTRQLMITAGASPTVDATGRKLVVFVP
AAVDDALQQGGTSNGDDDVLSVSAQLSSLDKQVAAVRQHTHTLLADTMRAMADFNTTWQA
LREAEATIESRLTTTATTTTTTTTTTTTATTTTTTTTTTTSSAPDRAGASTSVFGSAPPL
LVYVAIGNAGAIIIAVIVLIVVRRRYASQPKVHVAKKRQPPNKHLSTSSLPATATTSPWR
HSFVGAGAGVRNSFSGDMPALRRHSSSSTTIIDEMLGARTVTNPLFHTAIEEADEAEGAS
QYYQQVEPVKEDTDSDVFDLDAIAGE
NT seq 5121 nt   +upstreamnt  +downstreamnt
atgctgctggcaagacttgtactggtgctggtcgccagtcactgcttgtgccctgctgtg
gcgcaaccatcgcccccgagtggctggacagactacatcaacgaatacgacgaggaactg
gactttacttgcgctccaggcaacgtcctctctggtctcctcagctaccacgacaacaat
aaagaggatcggcggtgggcattcacgtgcaaagaggcggagctgtttgagcattgggag
agcggatggatcaacaactttgacgcgcctgcaagcatcacctgcccaagcggctttgca
ctcaccggcctacgaagctaccacgactcaaacaatgaggaccggagatcgcaggcccgt
tgccagcggttcaccagcccgctcgcatatgagacatcgtgcgcgtggacgaactacatc
aacacctttgatgaccccctctcttggtccgtttcttccacccgcgtcattcgtgggttt
ggctcctaccacagcaacaacaacgaggatcgacggttcaaattcctgcactgcggcgtt
tcctgcttccaaccggccgtgcagtccgatgcacaatgcgaatgcacctccgactacttc
aagaaccacggaacgtgccagcaaattccaattggtgcacccggtccaaaggggttcacg
ggcgataccggcgcgaagggtccacagggtccacagggagcacgcggcccgcaaggcgct
ccaggccaggacggtgctgttggcgccaaagggatcaagggcgacatgggcgcaccagga
ccagccggtccgcagggcgatcaaggttctcctggccccattggacctcaggggcctgtg
ggggtgcctggccttcaaggcgtcaagggaccacaggggctgccggggccacagggcgac
cagggcatcaaaggtgttcaaggtgatcccggcccacagggcagcccaggtcccagtggc
atccagggagataagggccctgtgggcgatattgggttgcccgggccacaaggaattccc
ggcccaaaaggaccaacaggccctgttggcgtgcgtggattgaaagggccaatgggcgac
cctgggcccattggcgtacaaggcgatgttggtgcacaaggcccccagggaatcaaaggg
ctgcaagggtcacaggggccacagggcctaaaaggagcgcagggcccacaaggcgatccc
ggcctgcagggtgtccagggcgacaaaggcacaacaggtgaccaaggtcctgtgggtcca
aagggccctcgtggcgaagatatcaacccagcgctgatccagcacctgcagagcaacatc
tcaatcgaagcgtcacagaccagcgacgctgccgaatccttgaatgcggacatatcctcg
cgcatcgtcaacacgtcgctcaccacagacgagctcatgcgcagcgccatctcgcacgag
acgcagcgccaggccgccgcccgctccatgctgagtctgcagatttcaacagaccaggcc
gccctgtccagtgaagtgcagcgcgccacgcaggcggagtcctccctctccgtgtccgtg
gccgggctgagcggcgccgtggtgggcggtgtctcctctgtatcgcagatgatcagcgca
atggacagcggtgccgtcgcgcgcgaggcgtccctgcacgtgcgcgccagcaacgagcgc
atcagggcagacagcgcgcacgcctcgctagaatcgcaactccaacagcaggccagcgcg
gtggcggctgcagacgcacgtgcgcgcagcacagaggacatgcttgcaagcagcctgtcg
ttgcaggtgacatcgagcatcagcggtgaggccaccactgcccagaacgtgtcatccctt
gcagccctggcccatgcccgccagctgtcactgcaatcggacatttcctccgctacacag
gaggccgggcaccaggagtcatccctgcagcgccaggcagagtcgctcgtgtccgcactc
agcacggaggagacacggcgtgtgcaggcctcgtcctccctggcatccagcatactcgca
cgacgatcaggtgccatggcgacagagtcatcgctagcagcagccatcagcgcacagcgc
acgtccacgggcaccagcatctcctccctcaccactgccctctcctctgccgcatccctt
ggacagcaggcagacgacagcctggcgtcgctgctgtctgcaacagcaaacgccgccgtg
tcccgggaaacgagtctgcagcacacgctcgacagcgccgtgtcccttgcctcgtctgca
gaggcgacacttgatcgcgagctcagcatcgacgtgtcgcgtgccgtgtctgcagaggcg
tccatatccacggccgtgcaggaccgcatctccactgcaaaggcggaagaggctgcgctc
gacagcgcgctgcagtcactgcatgatgttgtgcgcgtgtccaacgcgaacgtctccctg
cagctgcaggcggcccagtcccgtgctgtgcgcgaggaaagtcgcctgtccgctgccgtt
gtcagcgaagccaatcgggccgagcacgcccgtgcggacgtggcatcctccctctccagc
gagcacgtccgcgcgctgtcggccgtatcgtcgctcaacgctgccgggcatgacgcaatg
acctctgcgcagtcatctgaagcgcacgtgagcagtgccatcacagcagaggccggccgg
gcgcaatcgcgagaggaaatcgtgagcgcagccatcagcgcgcacactgtctcccgcctc
tctgcacagggcgtgctgtcatcgtccattaccgctgctagcagcgcggcaagggtaaat
gcttcgcagttgcgcgcaaacgttgcagcgctctcctccacactgcaccagcagcacagc
cagcttgagacctcgtttgcgatcgttgcctctgacacgtcaaccgccctcagcagcctg
gaggtgtttcgcactgcagtcgacaccagcgcggtgtccagggcgacgagcattgctgcc
gacatctcagcagagcagagcaggtcgtcagcgcagcacgcgtcgctcaactcgcagctg
ttaacagccatcgctcgggcagacagtgcgcaggcagcgttgagggtcgaggagcagggt
gcggcttccagtgccagcaccgccgcttcgtcgctggcggtggcagcagagcaggagcgg
gcgcgcgcggtaaaccggacactggagctgaacagccaagtgttgcaggagcagagccgc
gtgcaagttgcgcatgcgagtgttgctgtctcgctggcgcaggtgtcatcggaagcaagc
gcgctcgccgccacgcacggcaactttgtgtcctctgaacagagcagaggcgccgacacc
cgcgcgtccatcgccacagcgctgtctcgcgacacacaaacgctacacgccgtggacgcg
tcgctggagacattcatctcggacgcgtcgcagcagctcatcacagcggatcagcagctg
tccactgagctctccggtgtgcagcagacgcggttggcggccgacgctgcgctgcgtgag
cacctaacgttcacgcacagcacgctgtcgaccatggtggcggttgaagcggacaaggcg
gtttcgcgggagcagcgggtgctggggcgtcacgccgctgtcgcacaggagctcaagaca
acgacggtgaaggcaatcatcgccaacgatgttgcctgcacgctcgagacgtgcaattca
cagaagattgtcatgtgtcccagcgcggcccacccaaacgctggtgcaacgacaggcctg
gtgcaggatctgctactggcgtttcaggccaacccggaacgctgggtgctcgacacatcg
cgacagccaaagccgtccacaatcggcttacaggaccttcgcattccgcgcgcatacatt
cgcacgtcgcggcaggatgacgcatgcctggagtttgacgtggatgtgggcagcgaggcg
gcgtacacggccgactacaccgcgccggcacagcagcagcagcagcagcaaagacggcgg
cggaggcggagtgttggagatgtgcgggcgcctggcactgacagcactggtggtgctgat
ggcgctggtggtgctgatggcgcttcatctagtggcatggaatacaagaactcgaaccac
cagcaacagttgcgggaccaactatcacagcaggagcagcaacagtctgtcgcgcgttcg
cgccgggttgcctttgtgtctgacgatgacttggcagagtggacgcgccagctcatgatc
acggctggtgcgtcgcccactgtcgatgccactggcaggaagttggttgtttttgtacct
gcagccgtggacgacgccttgcaacagggcggaaccagcaacggcgacgatgatgtgctt
tccgtgtctgcacaactgagttcgcttgacaagcaggtggctgcggtgcgtcagcacacg
cacacgctgcttgcggacaccatgcgcgcaatggccgacttcaacacgacgtggcaggcg
ctgcgtgaagcggaggccacgattgagtcgcggctcaccaccacagccaccacgaccacg
accacgacaacgaccaccacaaccgcaaccacgacgacgacaacaacaacgacaacaacg
agcagtgcaccggacagagcgggcgcgagcacgtccgtatttggctctgcgccgccgctg
ctggtttatgttgcgattggcaatgctggcgccatcatcatcgccgtcatcgtcctgatt
gttgtgcggcggcggtacgccagccagcccaaggtgcacgtggccaagaagcgccaaccc
cccaacaagcacttgtccacctcgtcccttcctgcaacagcaacaacatccccgtggcgc
cattcgtttgttggtgccggcgctggcgtccgcaattccttcagcggggacatgcctgct
ctccgccgccactcctcctcgtccacgaccatcatcgacgagatgttgggggcgcgcacg
gtgacgaacccgctgttccacacggcgattgaggaagcagacgaggcggagggtgcgagt
cagtactaccagcaggtggagcctgtgaaggaagatacagactccgacgtgtttgatctc
gacgccatcgccggagagtga

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Genome (1)   
   KEGG GENOME (1)   
Gene (104)   
   RefGene (101)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (110)   

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