KEGG   Sus scrofa (pig): 100517221
Entry
100517221         CDS       T01009                                 
Symbol
NPAS1
Name
(RefSeq) neuronal PAS domain-containing protein 1 isoform X1
  KO
K09098  neuronal PAS domain-containing protein 1/3
Organism
ssc  Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    100517221 (NPAS1)
Transcription factors [BR:ssc03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   Factors with PAS domain
    100517221 (NPAS1)
SSDB
Motif
Pfam: PAS_3 PAS_11 PAS HLH PAS_4
Other DBs
NCBI-GeneID: 100517221
NCBI-ProteinID: XP_020950282
Ensembl: ENSSSCG00000003108
Position
6:52857739..52874741
AA seq 592 aa
MAAPYPSSGGGGEVRCGGGRGGSVPWDFLPGLVVKAPPGPCLQAQRKEKSRNAARSRRGK
ENLEFFELAKLLPLPGAISSQLDKASIVRLSVTYLRLRRFAALGAPPWGLRTAGPPASLG
RRGPVALVSEIFEQHLGGHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSV
FDYIHPGDHSEVLEQLGLRAPTSGPPTPPSVPSSSSSSSSSSSFADTPEIEASPTEMSPS
SRVQERSFFIRMKSTLTKRGLHVKASGYKVIHVTGRLRARALGLVALGHTLPPAPLAELP
LHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRIRQSHLDLLD
KGQVMTGYYRWLQRAGGFVWLQSVATVAVSGKSPGERHVLWVSYVLSQAEAGETPLDAFQ
LPASLACEDASSPEPEPTEPEPPVEGKQAAPREEEEAPQPRGKAIKMEPSPQEPEDREDS
GDEEPSGHLAPPRPEFTSVIRAGALKQDLVGPWSLTPPGDPPPSLLHTGFLPPVMRGLCA
PGTIRYGPAELGLVYPHLQRLGPGPALPEAFYPALGLPYPGPLGTRVQRKGD
NT seq 1779 nt   +upstreamnt  +downstreamnt
atggcggccccctaccccagcagtggtggcggaggcgaagtcaggtgcgggggaggtcgc
ggcggcagcgtcccgtgggactttctgccggggctcgtggtcaaggcccctcccggaccc
tgcctgcaggcgcagcgcaaggagaagtcccggaacgcagcgcgctcgcggcgcggaaag
gagaacctggagttcttcgagctggccaagctgctcccgctgcccggagcgatctccagc
cagctggacaaggcgtccatcgtgcgcctcagcgtcacctacctccgcctgcgccgcttc
gctgcgctcggggcgccgccctgggggctgcggaccgcggggccgccggccagcctcggc
cgcaggggccccgtggcgctggtctctgagatcttcgagcagcacctgggaggacacatc
ctgcagtccctggatggcttcgtgtttgccttgaaccaggaagggaagttcctctacatc
tcagagacggtctccatttatctgggtctctcacaggtggagctgacgggcagcagcgtc
ttcgactacatccatcccggggaccactctgaggtgctggagcaactggggctgcgggcg
ccgacctccgggccccccaccccaccctccgtcccctcatcttcctcctcctcctcatcg
tcctcctcgtttgcggatacccctgagattgaggccagccccacggagatgtccccctcc
tcccgggtgcaggagcgctctttcttcatccgcatgaaatccactctcaccaagaggggg
ctgcacgtcaaagcctcggggtacaaggtcatccacgtgacgggccgccttcgggcccgc
gccctgggtctcgtggccctgggtcacacgttgcccccggcccccctggctgagctgccg
ctacacggacacatgatcgtcttccgactcagcctgggtctcaccatccttgcttgtgag
agcagagtcagcgaccacatggacctggggccctcggagctagtgggccgcagctgctac
cagtttgtccacggacaggatgcgaccaggatccgccaaagccacctggacctgctggac
aaggggcaggtgatgaccggttactaccgttggctgcagcgcgctgggggcttcgtgtgg
ctgcagtctgtggccactgtggccgtgagtgggaagagccctggagagcgccacgtgctc
tgggtcagctacgtgctcagccaagccgaggcaggggagacacctctggacgcctttcag
cttccggccagcttggcctgtgaggacgcgtccagcccggagccagagcccacagagccg
gagcctccagtggaaggaaagcaggccgccccccgggaggaggaggaggccccccagccc
cggggcaaagccatcaaaatggagcccagcccccaggagcctgaagaccgggaggacagt
ggggatgaggagccctcgggccacctggcccctcccaggcccgagttcacgtctgtcatc
cgggcaggggccctgaagcaggacctggtggggccctggagcctgacgcctcctggagac
cccccaccttccctcctgcacacgggcttcctgccgcccgtcatgcggggcctgtgcgcc
ccgggcaccatccgctacggcccggccgagctgggcctcgtgtacccgcacctgcagagg
ctgggtcccggccccgcgctccccgaggccttctaccccgccctgggcctgccctatccc
gggccgctgggcaccagggtgcagcgcaagggggactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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