KEGG   Serratia surfactantfaciens: ATE40_020620
Entry
ATE40_020620      CDS       T06779                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
ssur  Serratia surfactantfaciens
Pathway
ssur03030  DNA replication
ssur03410  Base excision repair
ssur03420  Nucleotide excision repair
ssur03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ssur00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ATE40_020620
   03410 Base excision repair
    ATE40_020620
   03420 Nucleotide excision repair
    ATE40_020620
   03440 Homologous recombination
    ATE40_020620
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ssur03032]
    ATE40_020620
   03400 DNA repair and recombination proteins [BR:ssur03400]
    ATE40_020620
Enzymes [BR:ssur01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     ATE40_020620
DNA replication proteins [BR:ssur03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ATE40_020620
DNA repair and recombination proteins [BR:ssur03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     ATE40_020620
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ATE40_020620
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH HHH_5 Ribosomal_60s
Other DBs
NCBI-ProteinID: AOF01536
Position
complement(4403864..4406662)
AA seq 932 aa
MAQIAENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYQPSHVAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHNMVKAMGLPLLVTPGVEADDVIGT
LALEAEKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGIGGLDALYGNLESIATLSFRGAKTMAAKLEQNK
EVAYLSYKLATIKTDVELDLTCAELTVSEPDVDTLQQLFKQYEFKRWLADVEAGVWLENK
KGAGAKAAGVAKAAVAAEAPKALAEAKLSQDGYVTILDEATFTDWLTRLKKAEVFAFDTE
TDGLDTLTANLIGLSFAIAPGEAAYLPVAHDYLDAPPQLDRAYVLEALKPLLEDEKALKV
GQNLKFDMSLLARYGIEMRGIAYDTMLESYVLDSVGGRHDMDSLADRYLGHKTITFEEIA
GKGKNQLTFNQIALEQAAPYAAEDADVTLQLHLAMWPQLKQSAELLTVFNEIEMPLLPVL
SHIERTGVLIDPAILSAHSQELAKRLAELEVQAHELAEEPFNLASTKQLQAILYEKQKLP
VLKKTPGGAPSTNEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHT
SYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHL
SQDEGLLKAFAEGKDIHRATASEVFGVPLDKVTSEQRRSAKAINFGLIYGMSAFGLARQL
GIPRGEAQRYMDLYFERYPGVLDYMERTRQQASEQGYVSTLDGRRLYLPDVRSSNGMRRK
AAERAAINAPMQGTAADIIKRAMIEVDAWLQGEEKPLVRAIMQVHDELVFEVHESVIDEA
SQRIRQLMEGSMTLAVPLKVDVGVGMNWDEAH
NT seq 2799 nt   +upstreamnt  +downstreamnt
atggcccagattgcagaaaacccactaatcctggttgacggttcctcctacctctaccgc
gcttaccatgccttcccgccgctgaccaactcggcgggtgagccgaccggcgcgatgtac
ggcgtgctgaatatgctgcgcagcctgctgctgcagtatcaaccgagccacgttgccgtg
gtgtttgatgccaaagggaagaccttccgcgacgagctgttcgctgaatacaagtcgcac
cggccgccgatgccggacgatctgcgtgcgcagatcgagccgctgcacaacatggtcaag
gcgatgggcctgccgctgctggtgacgcccggcgttgaggcggacgacgttatcggtacg
ctggcgctggaggccgagaaggccggccatgcggtgctgatcagcaccggcgacaaagac
atggcgcagctggtgacgccgaacgttaccctgatcaacaccatgaacaacacgatcctc
ggcccgcaggaagtgtgcgacaagtacggtattccgccggaactgatcatcgacttcctg
gcgctgatgggcgattcatcggacaacattcccggcgtgccgggcgtgggcgagaaaacc
gcccaggcgttgctgcagggcatcggcgggctggatgcgctgtacggcaatctggagagc
atcgccacgctgagcttccgcggcgccaaaaccatggcggccaagttggagcagaacaaa
gaggtcgcgtacctctcctataagctggcgacgatcaaaaccgacgtcgagctggatctg
acctgcgctgagctgacggtgtccgagccggatgtcgatacgctgcaacagctgttcaaa
cagtacgagttcaaacgctggctggcggacgtggaagccggcgtatggctggaaaacaag
aaaggcgcgggcgcgaaagctgccggcgtcgccaaagcggccgtcgccgcggaagcgccg
aaagcgctggcggaggccaagctttctcaggacggttatgtcactatcctggatgaagcg
acctttaccgactggctgacgcggctgaaaaaggccgaggtatttgccttcgatactgaa
accgacgggctggataccctgaccgccaacctgatcggcctgtccttcgcgatcgcaccg
ggcgaagcggcttacttgccggtggcgcacgattatctggatgcgccgcctcagctggat
cgcgcctacgtgctggaagcgcttaagccgctgctggaagacgagaaggcgctgaaagtc
gggcaaaacctgaagttcgacatgagcctgctggcgcgctacggcatcgagatgcgcggc
attgcctatgacaccatgctggagtcctatgtgctggacagcgtcggcggccgccatgat
atggacagcctggccgaccgttatcttggccataaaaccatcaccttcgaagaaatcgcc
ggcaagggcaaaaaccagctgacgttcaaccagatcgcgctggagcaggcggcaccttac
gccgccgaagacgccgatgtcacgctgcagctgcacctggcgatgtggccgcagctgaag
caaagcgcggaactgctgacggtattcaatgagattgaaatgccgctgttgccggtactg
tcgcatatcgaacgcaccggggtgctgatcgatccggccattttgtcggcccactcccag
gagctggccaagcgtctggctgagctggaagtgcaggcccatgagctggcggaagagccg
ttcaacctggcgtcgaccaagcagctgcaggcgatcctgtacgaaaaacaaaagctgccg
gtgctgaagaaaaccccgggcggggcgccttctaccaacgaagaagtactggccgaactg
gcgctggactacccgctgccgaaggtgattctggaataccgcggcttggcgaagctgaaa
accacctacactgacaagctgccgctgatgatcaatccggtcagcggccgggtgcatacc
tcataccatcaggcggtgactgccaccggtcgtctctcctcgagcgatccgaacctgcag
aacatcccggtgcgcaacgaagaagggcggcgtattcgccaggcctttatcgcgccggaa
ggctaccgcatcgtcgccgccgactactcgcagatcgagttgcgcatcatggcgcatctg
tcacaggatgaagggctgctgaaggccttcgccgaagggaaagacatccaccgtgccacg
gcgtcggaagtgttcggcgtgccgttggataaagtgaccagcgagcagcgccgcagcgcc
aaagcgattaacttcggcctgatttacggcatgagcgccttcggcctggcacgccagttg
gggatcccgcgtggggaagcccaacgctatatggatctctacttcgagcgttacccgggc
gtgctggactatatggagcgcactcgccagcaggcctccgaacagggctacgtcagcacg
ctggacgggcgccgcctgtacctgccggacgtacgctccagcaacggcatgcgccgcaag
gcggccgaacgcgccgccatcaacgccccgatgcagggcaccgcggccgatatcatcaag
cgtgcgatgatcgaggtcgacgcctggctgcaaggggaggagaagccgttggtgcgcgcg
attatgcaggtgcacgatgaattggtgtttgaggtgcatgagtcggtgatcgacgaagcc
agccaacgcatccgccaactgatggaaggcagcatgacgctggcggtgccgctgaaggtt
gatgtgggcgtcggcatgaactgggatgaagcgcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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