KEGG   Candidatus Solibacter usitatus: Acid_7397
Entry
Acid_7397         CDS       T00412                                 
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
  KO
K03092  RNA polymerase sigma-54 factor
Organism
sus  Candidatus Solibacter usitatus
Pathway
sus02020  Two-component system
sus02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:sus00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Acid_7397
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Acid_7397
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sus03021]
    Acid_7397
Transcription machinery [BR:sus03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Acid_7397
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_17 LacI HTH_23 HTH_3 HTH_IclR HTH_Tnp_ISL3 HTH_38 Fe_dep_repress BRICHOS MAGSP
Other DBs
NCBI-ProteinID: ABJ88306
UniProt: Q01PW4
Position
complement(9281297..9282904)
AA seq 535 aa
MSLLSPRLQLKVAQKQILTPGLVQMVTVLQLNRLELKEMITQEIVKNPVLEESTNEPGEE
ITPEELLPLLEAEHVQDPADRQLLEAAVLTDANSVDGSNGSAINGNLFPDAEESAAAAAV
AENDTIATNDPLAEAPAATDPFDEIDFGSFFDEYLDPGYKSPASESVEKPSFETFLTAPI
TLGDHLRSQLSVSLASDEVRDAAESIIGNLDEDGYLSASLDEIAAMGSHTAAEVEQALIV
VQSLDPAGVGARNLRECLLLQIESINGRGGVAWQIVSNCLRLLETKQYKEIAKVLSRPLE
HIETAVHMIQHLNPRPGLRYSGAGARVVEPDVFFTKDGDDYIIQMNDEDVPQLRLNAQYR
RMLDRENGATKEVRDYVRERYTSAIQLMKNIEQRKQTILKVCQAIVRRQTEFLSHGLDYL
KPMMIKEVAEEVGVHPSTVSRAVASKYVHTPQGVFELRYFFSEAVQGPSGGGTPLLLLKR
KVKKMIDDEDRSKPLTDEQITLLLQGEGINVTRRTVAKYREDMKIPSTHQRRVRN
NT seq 1608 nt   +upstreamnt  +downstreamnt
atgagcttactgtcgcccagactccaattgaaggtcgcgcagaagcagatcctgacaccc
gggctcgtgcagatggtgaccgtcctccagcttaaccggctggaactaaaagagatgatc
acccaggaaattgtcaagaatccggtcctggaagagtccacaaacgaacctggcgaggaa
attacgcccgaggaactgctgcccttgctcgaggcggagcatgtgcaggaccccgccgac
cgccagctcctcgaagccgccgttttaaccgacgccaactccgtcgatggctccaacggc
tccgctatcaatggcaatctcttccctgacgccgaggagtcggccgccgccgccgctgtc
gctgaaaacgacaccatcgcgaccaacgaccccctcgccgaggcccccgccgccaccgat
cccttcgatgagatcgatttcggatctttctttgacgagtacctggatcccggctacaag
agtcccgcttcggagtccgtcgaaaagccatcgttcgaaacttttcttaccgcccccatc
acgctcggcgaccatctgcgctcgcagttgagcgtcagcctcgcctccgatgaggtgcgt
gacgctgccgaatccatcatcggcaacctggacgaggatggttatctctccgcctctttg
gacgagattgccgccatggggtcgcatactgccgccgaggtggagcaggccctgatcgtc
gtccagtcgctcgacccggccggagtcggtgcccgcaatctccgcgagtgcctgctgctc
cagatcgagagcatcaacggccgaggcggcgtggcctggcagatcgtttccaactgcctc
cgcctgctcgagaccaaacagtacaaggaaattgccaaagttctttcgcgtccgctcgag
cacatcgagactgccgtgcacatgatccagcacctcaacccgcgccccggcctgcgctat
tccggcgctggcgcgcgcgtcgtggagcccgacgtcttcttcaccaaggatggcgacgac
tacatcatccagatgaacgatgaggatgtgccgcagctccgcctcaacgcgcagtaccgc
cgcatgctcgatcgcgagaatggcgccaccaaagaggtccgcgattatgtccgcgaacgc
tacacctccgccatccagctcatgaagaacatcgagcagcggaagcagaccatcctgaaa
gtctgccaggcgatcgtccggcgccaaaccgaattcctcagccacggcctggattacctg
aagccgatgatgatcaaggaggtcgctgaggaagtcggcgtccatccttccaccgtgagc
cgcgccgtcgccagcaagtacgttcacaccccgcagggcgttttcgagctccgctatttc
ttctcggaagcggtgcagggcccctccggcggcggtaccccgctgctcctgctcaagcgc
aaggtcaagaagatgatcgatgacgaggaccgcagcaaacctctcaccgatgagcaaatt
actttgcttttgcagggcgaaggcatcaacgtgacccgtcggaccgtcgccaaataccgg
gaagacatgaagattccgtccacccatcagcgccgggtacgaaattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (30)   

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