KEGG   Thiobacillus denitrificans: Tbd_2685
Entry
Tbd_2685          CDS       T00275                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
tbd  Thiobacillus denitrificans
Brite
KEGG Orthology (KO) [BR:tbd00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:tbd02048]
    Tbd_2685
Enzymes [BR:tbd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Tbd_2685
Prokaryotic defense system [BR:tbd02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Tbd_2685
SSDB
Motif
Pfam: SWI2_SNF2 HSDR_N ResIII DEAD DUF4192
Other DBs
NCBI-ProteinID: AAZ98638
UniProt: Q3SFH2
Position
2761562..2764591
AA seq 1009 aa
MNPNVQECSFEETIEAHLFANGYASLPASDYDAALALFPTSVLTFVRATQLKEWAKLEAL
HGANTEATVLKDLTHWLDTHGTLAVLRNGFKCYGRTLRVAYFKPAHGMNPELAAQYAANR
VGVIRQLRYSQRNTNELDLVLSINGIPVFTAELKNPMTGQTVTNAIAQYQHDRDHREPLF
EFKRRALVHFAVDTEQVFMTTRLAGSATHFLPFNKGLDGGAGNPPDPAGRAYRTAYLWEE
VWQRDSLLDIFARFIHLQVEEKRTDDGRKIKKETMIFPRYHQLRAVRELEDAARTEGPGH
NYLVEHSAGSGKSNTIGWLAHRLASLHNESDHKVFDSVIVITDRRVLDRQLQDTIYQFEH
RQGVVQKIDEDSRQLAEALTNSVPIIISTLQKFPFVARQLARMAEERREGADGILPTRRC
AVIIDEAHSSQSGETATDLKEVLGGHVLREEAARYAVDEGVDNLDELYRSMAKRGRQTNL
SFFAFTATPKHKTLAVFGRDEAGKAGQPFHRYTMSQAIEEGFIMDVLKNYTTYATYYKLV
KASEDDPNVERKQAAKALARFMRLHPYNIAQKTEVMVEHFNAVTRHKVGGKAKAMVVTGS
RLEAVRYKLAFDAYIREKGYSWIKTLVAFSGEVVDDELPGKTWTEVGMNGGIKEGVLPEK
FDSSEYQVLLVAEKYQTGYDQPLLHTMYVDKRLAGIQAVQTLSRLNRMHPLKEDTFVLDF
VNDRQEIKEAFKQYHEGAEMGEEADPNQMYAIKAELDASGIYLLEEMQRFIGIYFKPKQR
QSPADHQAMNAALDPAVDRFRAVQEEDEEQAELWRGKLSAFRNLYAFLSQVAPYQDSDLE
RLYTFLRFLSPKLPKRTTGQRYSFDDEVRLEYYRLQKISEGSISLRDGKAELLDGPGEVG
SGARHDEDVPLSSLIDVINERFGTDFTDADQLFFDQIIEAAMEDGSLLEAAAVNPEEKFA
LLFAGLLETLFIERMEQNEDIFARFMNERDFQSLVSKWISGKVYARLRS
NT seq 3030 nt   +upstreamnt  +downstreamnt
atgaatcccaatgtccaagaatgcagtttcgaggaaacaatcgaggcacatctattcgcc
aacggctacgcatcgcttccagcatcggactacgatgcagcgctggccttgtttcccact
tctgtactcaccttcgtccgcgccactcaactcaaggaatgggccaagctagaagccctg
cacggcgccaacaccgaagccaccgtcctcaaagatctgacccactggctcgacacgcac
ggcacgcttgccgtgctgcgcaatggattcaagtgttatggccgcaccctgcgtgttgcc
tatttcaagccggcccacggcatgaatcccgagttggcggcccagtacgcggccaaccgc
gttggcgtcatccggcagttgcgctacagccagcgcaataccaatgagctggacctggtg
ctgtctatcaacggaattccggtgttcacggccgagctgaaaaacccgatgaccgggcag
acggtaacgaacgctattgcccagtatcagcacgaccgcgaccaccgcgagccgctgttc
gaattcaagcgccgggcgctggttcacttcgccgtcgataccgagcaggtgttcatgacg
acccgactggccggcagtgccacgcatttcctgcccttcaataaggggctggatggcggt
gccggcaatccgcctgatccggcgggccgcgcttatcgcaccgcttatctctgggaagag
gtgtggcaacgcgacagcctgctggacatttttgcgcgcttcatacacttgcaggtggag
gagaaacgcaccgacgatgggcggaagatcaagaaggagaccatgatctttccgcgctac
caccagttgcgggcggtgcgcgagctagaagacgcggcaaggacggagggccccggccat
aactatctggtggagcattcggcgggcagcggcaagagcaacactatcggctggctggcg
caccgcttggcctcgctgcacaatgagtccgaccacaaggtattcgattcggtaatcgtc
atcaccgaccgccgcgtgctggatcgccagttgcaggacacgatctaccaattcgagcac
cgacagggcgttgtgcagaagatcgacgaggactcgcggcaactcgccgaggcgctgacc
aacagcgtgccgatcatcatctccactttgcagaaattccctttcgttgcccggcaactg
gcccggatggccgaggagcgtagggagggggctgacggaatactgcccacccgtcgttgc
gcggtgatcatcgatgaggcccacagttcgcaatccggcgagacggctacggacctcaag
gaagtgttgggtggccacgtattgcgagaagaagcggcgcgctatgccgtcgatgaaggt
gtcgacaacctggacgagctttaccgcagcatggccaagcgcgggcgccagacgaatctc
agcttcttcgcctttacggccacccccaagcacaagaccctggccgtgttcgggcgggat
gaggcaggcaaggccggccaacctttccaccgttacaccatgagtcaagccattgaagag
ggcttcatcatggacgtgctgaagaactacacgacctacgccacctactacaagctggtc
aaagccagcgaggacgaccccaacgtcgagcgcaagcaggccgccaaggcactggctcgc
ttcatgcgattgcacccctacaacattgcacagaagactgaggtgatggtcgagcatttc
aacgcggtcacccgtcacaaagttggtggcaaggcaaaagcaatggtggtgaccgggtcc
cgactggaagcggttcgctacaagctagccttcgatgcgtatatccgtgagaagggttat
agctggatcaagacactggtcgcattttccggcgaggtagtggatgacgagctgccgggc
aagacctggaccgaggtcggtatgaacggagggatcaaagaaggggtgctgccggagaaa
ttcgactcgtccgagtaccaagtgttgctagtcgccgagaagtaccagacgggctacgac
cagccgctgctgcacacaatgtacgtcgacaaacgtctcgccggcattcaggcggtgcaa
accctgtcgcgcctgaatcgcatgcacccgctcaaggaagacactttcgttctggatttc
gtgaacgaccgacaggagatcaaggaagccttcaagcaataccacgaaggcgccgagatg
ggtgaggaagccgatccgaaccagatgtacgccatcaaggcggaactggatgcgtcgggt
atctacctgctggaagagatgcagcgcttcatcggcatctatttcaagccgaagcagcga
caaagccctgccgatcatcaggcaatgaacgccgcgcttgatccggccgtggatcgcttc
cgggcagtgcaggaggaagatgaggaacaggccgagttatggcgcgggaagctcagtgcc
ttccgcaacctctacgccttcctgtcgcaggtcgccccctaccaggattccgatctcgag
cgcctgtataccttcctgcgctttctgtcgcccaaattacccaagcgcaccacaggccaa
cgctacagcttcgatgacgaggtgcgactggagtattaccgcctgcagaagatcagtgag
ggatcgatcagtctgcgtgatggcaaggcagaactgctggacggtcccggcgaagtcggt
tccggagcgcgccacgacgaagatgtgccgctctcaagtctgatcgatgtgatcaacgaa
cggtttggcacggacttcaccgatgccgaccaattgttctttgaccagattatcgaggcg
gccatggaggacggttcgctgctcgaggccgctgccgtcaacccagaggagaagtttgcc
ctgctatttgctggcctattggaaacgctgttcatcgagcgcatggagcagaacgaggat
atctttgcgcgcttcatgaacgagcgggactttcagagccttgtctcaaaatggatttct
gggaaagtctatgcccgactccgatcctaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (23)   

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