KEGG   Theobroma cacao (cacao): 18610240
Entry
18610240          CDS       T02994                                 
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
tcc  Theobroma cacao (cacao)
Pathway
tcc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tcc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    18610240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tcc03041]
    18610240
Enzymes [BR:tcc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     18610240
Spliceosome [BR:tcc03041]
 Complex C
  Other components
   Step II factors
    18610240
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD HA2_N AAA_22 AAA_19 ResIII nSTAND3 FtsK_SpoIIIE ATPase AAA_24 AAA_29 T2SSE
Other DBs
NCBI-GeneID: 18610240
NCBI-ProteinID: XP_017971089
Position
2:complement(39397234..39403513)
AA seq 720 aa
MPSMAQTPNPSANGNLSFNHNNNNNNKPNFFARSRKILEQRKSLPIASVERRLIEEVRKH
DNLIIVGETGSGKTTQIPQFLFNAGFCRGGKTVGITQPRRVAAVTVAKRVAEECGVELGQ
KVGYSIRFEDVTSSSTSIKYMTDGLLLREALLDPYLSKYSVIVVDEAHERTVHTDVLLGL
LKKVHNVRSKYIRDHTSVGHKRASDGAILEKENADPCISVLKQCEGRKLPPLKLIIMSAS
LDARVFSEYFGGARAVHIQGRQFPVDIFYTVNPQTDYLDSAIITIFQIHLEEAPGDILVF
LTGQEEIESVEKQIQDNLRQLPEDSRKMSTAPIFSSLPSEQQMRVFAPAPAGFRKVILAT
NIAETSVTIPGVKYVIDPGVVKARCYDPIKGMESLIVVPTSKAQALQRSGRAGRDGRGKC
FRLYPESEFEKLEDSTKPEIKRCNLSNVILQLKALGVDDIFGFDFIEKPSRAAIKRSVEE
LILLGALTDDCKLSDPVGHQMARLPLDPIYSKALILASQFNCLEEMLIAVAMLSVESIFY
EPREKKNEARTAKNCFASPEGDHLTLINVYRASNDLLEKRKSEVGKDKHEKILRKWCKEN
FISSRSLRHARDIHSQIQQHVEQMGLCISSCGDDTLQFRRCLAAAFFLNAALKQPNKTYR
ALASGEVVHIHPTSVLFHTKADCIIFNEFVKTSKEYIRNVTIIDGFWLTELAPHYYARQE
NT seq 2163 nt   +upstreamnt  +downstreamnt
atgccatcaatggcgcaaaccccaaaccccagcgccaacggcaacctctcctttaaccac
aacaacaacaacaacaataaacccaacttctttgccaggagtcggaagattttagagcag
cggaagtctcttcctattgcttcagttgagagaagacttattgaggaggttcggaaacat
gataacttaatcattgttggtgaaactggaagtgggaaaacaacccagatacctcagttt
ttattcaatgctgggttctgccgtggtgggaaaactgttgggataacgcagcctaggcgt
gttgctgctgttactgttgcgaaaagggtagctgaggaatgtggtgttgagttggggcag
aaagttgggtattctattaggtttgaggatgtcacttctagctcaacaagtatcaagtac
atgactgatggattacttcttagggaggcattattggatccatatctctctaagtattca
gtgatcgttgttgacgaagctcatgagagaactgtccacactgatgtattgttgggtttg
ctgaaaaaggtacacaatgtgaggtccaaatatataagagaccatactagtgtaggtcat
aagagggcaagtgatggtgcaatcttggagaaagaaaacgctgatccatgcatcagtgtt
ttaaagcaatgcgaggggaggaaattacctcctttgaaattaatcatcatgtctgccagc
ttggatgcacgtgtgttctctgaatactttggtggtgcaagagcagttcacattcaaggt
cgacagtttccagtggatatattttatactgtcaatcctcagactgattatttagattca
gcaattatcaccattttccagattcatttagaggaggcccctggtgacattcttgtattt
ttgactgggcaagaagagatcgaatctgttgaaaagcaaatccaggacaatttacgacaa
ttacctgaagatagtcgaaaaatgtcaacagctcctatattttcgtctcttccttcagaa
cagcaaatgcgagtttttgcacctgctcctgcaggtttccgtaaggttatattagcaacc
aatattgctgagacatcagtgacaatacctggagttaagtatgttatagatcctggagtt
gtaaaagcacgctgctatgatccgatcaaagggatggaatcattgattgttgttccaact
tcaaaagcacaagcactccaaagaagtggacgtgcagggcgtgacggacgtggaaagtgt
ttccgtctctacccagagagcgagtttgagaagcttgaggattcaaccaagcccgagatt
aaaaggtgcaacctctcgaatgtcattttgcagctcaaggccctgggtgttgatgatatt
tttggatttgacttcatagaaaaaccctcaagggctgctattaaaagatcagtggaggag
ttgatcttgctaggtgctttaacagatgactgcaaactgtcagatccagttggtcatcaa
atggctcgtctcccattagatcccatttattctaaagctctcatcctagctagccagttc
aactgcctagaagaaatgttgattgctgttgcaatgctctcagtagaatctattttttat
gagccgcgtgagaagaaaaatgaggcaagaactgcaaagaattgctttgcaagtcctgag
ggagaccatctcactttgataaatgtataccgagcatctaatgatttattggagaagaga
aagtcagaggttggcaaagacaagcatgaaaaaattcttagaaaatggtgcaaggaaaac
tttatcagtagccgttctttgagacatgctcgcgacatccacagtcaaatccaacaacat
gttgaacaaatgggcctttgtatttcttcttgcggagatgacacacttcagttccgtaga
tgccttgctgctgcttttttccttaatgcagctttgaagcagcccaacaaaacatacagg
gctttggcaagtggtgaggtggtgcacatccaccctacttctgtattattccacactaaa
gctgactgcattattttcaacgagtttgtcaaaacttctaaggagtacatccgcaatgta
acaataattgatggcttttggttgactgagttagccccccactattatgccaggcaggag
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (14)   
   Pfam (14)   
All databases (42)   

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