KEGG   Tuber melanosporum: GSTUM_00010675001
Entry
GSTUM_00010675001 CDS       T01282                                 
Name
(RefSeq) hypothetical protein
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
tml  Tuber melanosporum
Pathway
tml03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tml00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSTUM_00010675001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tml03041]
    GSTUM_00010675001
   03009 Ribosome biogenesis [BR:tml03009]
    GSTUM_00010675001
Enzymes [BR:tml01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     GSTUM_00010675001
Spliceosome [BR:tml03041]
 Complex A
  U2 snRNP components
   U2 related factors
    GSTUM_00010675001
 Complex B
    GSTUM_00010675001
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    GSTUM_00010675001
Ribosome biogenesis [BR:tml03009]
 Eukaryotic type
  90S particles
   Helicases
    GSTUM_00010675001
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD Flavi_DEAD
Other DBs
NCBI-GeneID: 9182117
NCBI-ProteinID: XP_002841500
INRA: GSTUM_00010675001
UniProt: D5GME8
AA seq 761 aa
MSTTEDRKRKKPQEKESQTNSPKRHKSEPVSPPSGNTKKPEIDPSKNPYLAHTYPAEENK
SDWGPLAGFKRHRTTTKMANIAEDGPFNPFSGNKLSDRYFNILEGRRELPIAAQRDEFLN
MFHKSQTMTTQIPQYVLFDDLPHLNGYKQVACTQPRRVAAMSVAKRVADEMDVELGHEVG
YSIRFEDKTSPNTILKYMTDGMLLREAMHDHLLERYSCIILDEAHERTLATDILMGLLKN
VVERRPDLKLIIMSATLDAQKFQHYFNDAPLLAVPGRTHPVEIYYTPEPERDYLEAAIRT
VLQIHTTEPEGDILLFLTGEEEIEDACRKINAEVDLLVREADVGPLKSYALYGTLPPQQQ
QRIFEPAPSPFKPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESL
LVSPISKASAQQRAGRAGRTRPGKCFRLYTESAFKKELIDQTYPEILRSNLANTVLELKK
LGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDDGNLTTLGKLAAEFPLDPALAVMLI
SSPEFFCSNEILSLTALLSVPQLFVRPLNNRQRADEMKKLFAHEDGDHLTMLNVYHAFKQ
QDSQPAWCREHFLSYRALQSADNVRAQLQRIMERLEIPLVSTDFSEKSYYENIRRALVSG
FFMQVAMKNSPGKAYITVKDNQDVLIHPSTALEKDSPWLVYNEFVLTTKSFIRTVTHIRP
EWLLEIAPGYYDVKDFREGPVRTGLERTMDKVRKRNALKRR
NT seq 2286 nt   +upstreamnt  +downstreamnt
atgtcgacaactgaagatagaaaacgcaagaagccccaagaaaaggaatcgcagaccaat
tcgcccaagcggcacaaaagcgaacctgtctctcctccctctgggaacacaaaaaagcct
gagatagacccatcaaaaaatccctatctcgctcatacgtaccccgcggaagagaacaag
agcgattgggggcccttggccggattcaagcgacaccgcacgacaacgaagatggcgaac
attgccgaggatggcccttttaatccgtttagcgggaataaattgagcgaccgttacttc
aacattttggagggaagaagagaactacctattgccgcacagagggatgaatttttgaac
atgtttcacaagtcccagaccatgaccacccaaatcccccagtatgttctattcgacgat
cttcctcacttaaatggttataagcaggtagcatgtacccaaccccgccgagtagctgcc
atgtctgtggcaaaacgtgtggccgatgagatggatgtcgagttaggccacgaggttggc
tatagtattcgttttgaggataaaaccagcccaaacactatcctcaagtacatgacagac
ggtatgttacttcgggaagccatgcacgaccacctacttgaacgctactcctgcattatt
ctcgacgaagcacacgagagaactctagcaacagatattcttatgggactacttaagaat
gtggtagaaaggcgcccggatttaaagctcattatcatgtctgctactctcgacgcccag
aagtttcaacattatttcaatgacgctccattgttggcagttcctggtcgcactcaccct
gtcgaaatttattacactccggaacctgagcgggactacctggaagctgccatacgtacc
gtgctccagatccacacgactgaaccggaaggtgatattcttctgttcctcacaggtgaa
gaggagatcgaggatgcttgtcggaagatcaatgcagaggttgacttgctcgtaagagag
gcagacgttgggcctctaaaatcttatgctctttacggcactctccccccccaacagcag
caaaggatttttgaacctgccccgtctccattcaagccaggtggaccgcctggacgcaag
gttgttgtatccacaaatatcgccgagacctcattgacaatagacggaatagtgtacgtg
gtggacccaggatttagcaagcagaaggtctacaacccgcgtatccgcgttgagtcctta
cttgtttcacctatttccaaggcttctgcgcagcaacgcgctggtcgtgctggtagaact
cgacctggtaaatgtttcagactttacaccgagtccgcattcaagaaggaactcattgat
caaacataccccgaaatcctgcgcagcaatctcgcaaataccgtattggagttgaagaag
ctcggcatcgacgacctagtccacttcgacttcatggatcctcctgccccagaaactatg
atgagagccttggaagaactgaactacctcgcctgtctcgacgatgacggaaacctcacc
accctcggtaaactcgcagcagagttccccctagaccccgctctagctgtaatgctcatc
agttccccggagttcttctgttcgaacgagatactctccctgaccgccctcctatcagtc
ccacagctcttcgtccgtcccttaaataatcgccagcgcgccgacgagatgaaaaaacta
ttcgcgcacgaggacggcgaccacctcacaatgctaaatgtctatcacgccttcaagcag
caggatagccaaccagcctggtgccgcgagcacttcctcagctatagagccctacagagc
gcagataacgtgcgcgctcaactacagcgcataatggaaagactagagatcccgcttgtc
agcacggacttttccgagaagtcctattacgagaacatccgcagagcccttgtttctggc
ttcttcatgcaagtcgccatgaaaaactcccctgggaaggcgtacatcaccgttaaagac
aaccaggacgtcctaatccaccccagtacagccttggaaaaagattccccatggctcgtc
tacaacgagttcgtcctcacgacaaagagctttatccgcacggtcacccacattcgccct
gagtggctgctggagattgcgccgggctactatgatgtcaaggactttcgcgagggtccc
gttaggaccgggctggagagaacaatggataaggttcggaagaggaatgctttgaagagg
agatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   INRA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (41)   

Download RDF
DBGET integrated database retrieval system