KEGG   Trichechus manatus latirostris (Florida manatee): 101360370
Entry
101360370         CDS       T05135                                 
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX60
  KO
K20103  ATP-dependent RNA helicase DDX60 [EC:5.6.2.7]
Organism
tmu  Trichechus manatus latirostris (Florida manatee)
Brite
KEGG Orthology (KO) [BR:tmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tmu03019]
    101360370
Enzymes [BR:tmu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     101360370
Messenger RNA biogenesis [BR:tmu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     101360370
SSDB
Motif
Pfam: DEAD ResIII Helicase_C Abi_alpha AAA_22
Other DBs
NCBI-GeneID: 101360370
NCBI-ProteinID: XP_023598633
UniProt: A0A2Y9S3E3
Position
Unknown
AA seq 1201 aa
MIDIIFSNPKYKKDKFVSLLKDFVESEFFLIDGXLFITCFLNVNLKGGQTLHFYYIVEQF
LSDFIQKEARFVIVFFKDVENMYFNCAEIFALRTTLIQHLEHNTHVQIHTEFSNCLSLEW
EMFLKECYPYFLIITDKGLTSRHTDFLNIFIIHALQKKINIVLSLGQNTDVLRIHGYYAP
SVYLHKQFFEKALPFSRRSNITKSKKIIEENQKRQLAKLEKREEERXNNLSLSIEKEIKG
DPNSGMQRLEDFLQRCPVKSVKFIAEMVGLEACFRSWVEYCLKSEAETKDVNIIIQMMKR
IHVIYDKYSELLQNSHQQKLAKYLKYIRFDNLAHSFCPQVKESGIEKDISKYSVCMGAAR
FQLTHMGRYLFRGERSDPDPRVHHFIPDTWQRELLDVVDNNESAVIVAPTSSGKTYASSY
CMEKILRESDEGVVVYVSPTKALVNQVVGTVCNLFNKTLPKGLVLCGVFTRDYRHDTLNC
QILVTVPQCLEMLLLSPHAQKWVKRIRYVIFDEVHCLGGEVGAEVWEHLLVMIRCPFLAL
SATISNPEDLTEWSVLIKRYWRDVESTMENSGASQNALKGSKKQESKWREKPSYXVRLVR
YKEQYNDLEKHVCSIKDNDXCHXNYHPCGALTVNHIKKYGIPLDLGFSPRESILLYDAMV
HIWPEWSRMQVDQFVKYLKPQTFDSAESEKRRTFPCFVEKLKQMDRLPAIFFSFLNSDSN
ARIQRIILRMAEISEIKKNLKKHTKVSPDCTYTDRTGVDDQTLRKILHRIRGTRLYCKLC
NLLQRGIGYHHGSMEYKEKQVVEMLFRMVHVKVVTATSSLAVGINMPCKSVVFTEDSVYL
DALNFQQMSGRAGRRGEDPIGNVFFYDIPLPKAERLLKSNVPELKGQFPLSISLILRLML
LVGKADDKEDAKAKALSVLQHSLMSFKQPRIKCVLKFYFIYSLQFLAAELVLWGYLDEDC
IPRGYSGLVCHLHYCEPANFVLVSFLGKRVFHKLCKPMSINGPKKFSEDVMETLVVVLAH
LFGRHYLPPCVEKRKKKFSPSVVVLDKLPKDFADVAEEHNNSIHRNFGSFLLTVPKLADM
RKEYQLPLSEIDFSGKECEDSELVPHLMPGSESRTAVSPFACLSNITDQDLFDINVVNDL
NKCDKNGRKCPLNGYALSFYKHGSLLALSLDNWLNMGDAFNLIRDFTLVIQAIRYSKHFH
I
NT seq 3606 nt   +upstreamnt  +downstreamnt
atgattgacatcattttttcaaacccaaagtacaaaaaggataagtttgtgagcttactt
aaagactttgttgagtctgaattttttttaattgatgganggttatttatcacttgcttt
ctcaatgtgaacttaaaaggaggacaaactcttcacttctactacatagtggaacaattt
ctgtctgatttcattcaaaaagaagccagatttgtaattgtcttttttaaggatgtagaa
aatatgtattttaattgtgctgaaatttttgcccttcgtaccaccttaatccaacattta
gaacacaatactcatgttcagattcacacggaattttccaattgcttgtctctggaatgg
gagatgtttcttaaagaatgttatccatatttcctaattatcacagataaaggattaaca
tctcgtcacacagactttttaaacatttttatcattcatgctcttcagaagaaaatcaat
attgtactgtctttgggacaaaacactgatgttcttagaattcatggctactatgcccca
agtgtgtatttacacaagcagttttttgaaaaggctttgccattctcaagaagatctaat
atcactaaatcaaaaaaaattattgaagaaaatcaaaaaagacagctagctaaactagaa
aaaagggaggaagaaagatgaaataacttgtccctgtccattgaaaaggaaatcaaaggg
gatcctaattctggaatgcaaagactagaagattttctccaaagatgccctgttaagtcc
gtaaaatttattgctgaaatggtaggattggaggcctgtttcagatcatgggtggaatac
tgtctaaagtcagaagcagaaactaaagatgtaaacataataattcagatgatgaaaagg
attcacgtaatctatgataaatactcagaactattacaaaattcacatcaacaaaaatta
gctaaatatttaaaatatatcagatttgacaacttggcacactcattttgtcctcaggta
aaggagtcaggtattgagaaggatatttctaaatactcagtttgcatgggagcagcacgg
tttcagttaacgcacatgggccggtacttatttcgaggagaaagaagtgatcctgatccc
agggtgcatcatttcataccagacacatggcagagggaacttcttgatgttgtagataac
aatgaatctgctgtgattgttgctccaacttcatcagggaaaacctatgcttcttcgtac
tgcatggagaaaatactgagagagagcgatgaaggggtggtggtatatgtttctccaaca
aaggcacttgttaatcaagtggtgggaactgtctgcaatttatttaacaaaacactgcca
aaaggcttagtgctgtgtggggtatttacaagagattaccgtcatgacaccttgaattgt
cagatattggtgacagtccctcagtgtttggaaatgcttttgctatcacctcatgcacaa
aagtgggtgaaaaggattagatatgtcatatttgatgaggttcactgtcttgggggagaa
gtgggagcagaagtttgggaacatcttcttgttatgattcggtgtccctttttggcactt
tctgctactatcagtaatcctgaagatcttactgaatggtcggtgctgattaaaagatac
tggcgagatgttgagagcacaatggaaaattctggtgcatcacaaaacgccttgaaaggt
tcaaagaaacaagaaagcaaatggagagaaaagccatcttactgagttagattggtacgt
tacaaagagcaatacaatgatctagaaaagcatgtgtgttccataaaggataatgacntt
tgtcattgaaattatcacccttgtggcgcactaacagtcaatcacataaagaaatatgga
atccctttagaccttggattttctcctcgagaaagcattctgctttatgatgctatggta
catatttggccagaatggtcaagaatgcaggtggatcagttcgtgaagtaccttaagcct
caaacttttgacagtgcagaatctgaaaagcgaagaacgtttccctgttttgtggaaaaa
cttaaacaaatggatagactgcccgcaatatttttttcttttttaaattcagattcaaat
gctagaattcaaagaattattttacgcatggctgaaataagtgagataaagaaaaatctc
aagaaacatacaaaagtttctccagattgtacgtatactgatcgtacaggtgtggatgac
cagactttaaggaagatcttacacagaattagaggaacaagactatactgcaaactgtgc
aatctgttacagaggggcattggatatcatcatggctcaatggaatataaagaaaaacaa
gttgtggagatgcttttcagaatggtgcatgtgaaggtggtaacagctacctcatccctt
gctgtggggattaatatgccatgtaaatctgttgtttttacagaagattctgtttatttg
gatgccttgaactttcaacagatgtctggtcgtgcagggagacgtggagaagatcctata
ggaaatgtgttcttttatgacatcccgttacccaaggcagaaaggctcttgaagtcgaac
gtgcctgaactgaagggtcagtttcctctgagcatatccctgattctcagacttatgctg
ttagttggcaaagcagatgacaaagaggatgcgaaagctaaggcattatcagtgctacaa
cattcattgatgtccttcaagcaaccaagaatcaagtgtgtgttaaaattttactttata
tattctttgcaatttttggccgcagagttggttttgtggggatacctggatgaggactgt
attcccaggggatattctggacttgtgtgccatttgcactactgtgaacctgcaaatttt
gttttagtaagcttcctgggaaaacgtgtattccacaagctgtgcaagccaatgagtata
aatggcccaaagaaattttctgaagatgtgatggaaaccttagtggtggtgttagcacat
ctctttggaagacattatttacctccatgtgtggaaaagcgtaagaaaaaattttctcct
tcagtggtagttctagataaacttcccaaggactttgctgacgtggcggaggaacacaac
aatagcatccacaggaactttggttctttcctcctcacagttcctaagttggcggacatg
agaaaagaataccaattacctctctcagaaatcgacttttcaggtaaagaatgtgaagac
tcagaactggtccctcatttgatgccgggatcagaaagcagaactgctgtctccccattt
gcatgcctgtccaatattactgatcaagatttatttgatattaatgtggtaaatgatttg
aataaatgtgataaaaacggaaggaaatgtccattgaatggctatgcattgagcttctac
aaacacggttcgctgttagccctgagtttggataactggttaaatatgggagatgctttt
aatttaatcagagattttacacttgttatccaagccatcaggtacagtaaacatttccat
atttga

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (41)   

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