KEGG   Trichoderma reesei QM6a: TRIREDRAFT_21425
Entry
TRIREDRAFT_21425  CDS       T02991                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
tre  Trichoderma reesei QM6a
Pathway
tre03013  Nucleocytoplasmic transport
tre03015  mRNA surveillance pathway
tre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TRIREDRAFT_21425
  09122 Translation
   03013 Nucleocytoplasmic transport
    TRIREDRAFT_21425
   03015 mRNA surveillance pathway
    TRIREDRAFT_21425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tre03019]
    TRIREDRAFT_21425
   03041 Spliceosome [BR:tre03041]
    TRIREDRAFT_21425
Enzymes [BR:tre01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     TRIREDRAFT_21425
Messenger RNA biogenesis [BR:tre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     TRIREDRAFT_21425
Spliceosome [BR:tre03041]
 Complex C
  Other components
   EJC/TREX
    TRIREDRAFT_21425
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    TRIREDRAFT_21425
SSDB
Motif
Pfam: DEAD Helicase_C ResIII DUF4844
Other DBs
NCBI-GeneID: 18483980
NCBI-ProteinID: XP_006961968
JGI: Trire2_21425
UniProt: G0RAM2
Position
Unknown
AA seq 433 aa
MSHEEDLIDYSDEEIGANETAAASNGKKGETTAATNVDKKGSYVGIHSTGFRDFLLKPEL
LRAIGDCGFEHPSEASQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSV
VVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKNDVETLKNKDTCPHIIVGTPG
RLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPQQKQVMMFSATLSDA
IKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEREKNRKLNELLDDLQFNQVIIFV
KSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGIDIE
RINLAINYDLPGDANSYLHRVGRAGRFGTKGLAISFVSTEQDQEVLKEIEKRFEVALPEF
PKEGVDASTYMAS
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgtctcacgaggaagatctcatcgactactccgacgaggagattggcgccaacgagacc
gccgccgcctccaacggcaagaagggagagaccactgccgccaccaatgtcgacaagaag
ggcagctacgtgggcatccactccacgggattccgcgacttcttgctgaagcccgagctt
ctgcgcgctatcggcgactgcggtttcgagcatccttcggaggcaagccaaacctgcatc
ccccaagcccttctgggcggagacattatctgccaggccaagtctggtctgggaaagact
gccgtctttgtcctggccacgcttcagcaggtcgagcccgtcaatggcgaggtctccgtt
gtcgtcatgtgccacactcgtgagctggcctaccagattcgagacgagtacaaccgattc
agcaagtacatgcccgacatcaagacgggcgtcttctatggtggcacccccatcaagaac
gacgttgagactctcaagaacaaggacacttgccctcacatcattgtcggcactcctggc
cgcctcaaggccctcgtccgtgacaaggccctccgtcttggaagcgttcgcatcttcgtc
cttgacgagtgcgacaagatgctcgaccagcctgacatgcgtaccgacgtgcaggatgtg
ttccgcgctacccctcagcagaagcaggtcatgatgttctcggccaccctgtccgacgcc
atcaagcccatctgccgcaagttcatgcagaaccccacggagcactacgtcgatgaagac
accaagctcactctgcacggcctgcagcagtactacatcaagcttgaggagcgcgagaag
aacaggaagctgaacgagcttctcgacgatctccagttcaaccaggtcatcatcttcgtc
aagagcaccgttcgcgctaccgagctggacaagctcctccgcgagtgcaacttcccctcc
atcgccgtccactctggagtcagccaggaggagcgtattcgccgctacaaggagttcaag
gagttcaagaagcgcatctgcgttgccactgacgtgttcggtcgtggtatcgatatcgag
cgtatcaacttggccatcaactacgacttgcccggcgacgccaactcctacctccaccgt
gtcggccgtgctggtcgattcggtaccaagggcctggccatttcctttgtgagcaccgag
caggaccaggaggtccttaaggagattgagaagcgattcgaagtcgctcttcccgagttc
cccaaggagggtgttgatgccagcacttacatggcgtcttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (29)   

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