KEGG   Trichoderma reesei QM6a: TRIREDRAFT_42919
Entry
TRIREDRAFT_42919  CDS       T02991                                 
Symbol
rpl40
Name
(RefSeq) ubiquitin fusion protein
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
tre  Trichoderma reesei QM6a
Pathway
tre03010  Ribosome
tre04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tre00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    TRIREDRAFT_42919 (rpl40)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    TRIREDRAFT_42919 (rpl40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:tre03011]
    TRIREDRAFT_42919 (rpl40)
   04121 Ubiquitin system [BR:tre04121]
    TRIREDRAFT_42919 (rpl40)
Ribosome [BR:tre03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    TRIREDRAFT_42919 (rpl40)
  Archaea
    TRIREDRAFT_42919 (rpl40)
Ubiquitin system [BR:tre04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   TRIREDRAFT_42919 (rpl40)
SSDB
Motif
Pfam: ubiquitin Rad60-SLD Ubiquitin_2 Rad60-SLD_2 Ubiquitin_5 TBK1_ULD Plexin_RBD DUF2604 Dsc3_N OTU1_UBXL HATPase_c Sde2_N_Ubi
Other DBs
NCBI-GeneID: 18484898
NCBI-ProteinID: XP_006965948
JGI: Trire2_42919
UniProt: G0RKY4
Position
Unknown
AA seq 74 aa
FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK
ESTLHLVLRLRGGI
NT seq 222 nt   +upstreamnt  +downstreamnt
ttcgtgaagaccctgacgggcaagaccatcacccttgaggtcgagtcctccgacacgatc
gacaatgtcaagtccaagatccaggacaaggagggcattcccccggaccagcagcgattg
atcttcgctggtaagcagctcgaggatggccgaaccctgtccgactacaacatccagaag
gagtccactctccacctcgtcctccgtctgcgtggtggtatc

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (49)   

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