KEGG   Trichinella spiralis: Tsp_08777
Entry
Tsp_08777         CDS       T01609                                 
Name
(RefSeq) putative DEAD/DEAH box helicase
  KO
K13181  ATP-dependent RNA helicase DDX27 [EC:5.6.2.7]
Organism
tsp  Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tsp03041]
    Tsp_08777
   03009 Ribosome biogenesis [BR:tsp03009]
    Tsp_08777
Enzymes [BR:tsp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Tsp_08777
Spliceosome [BR:tsp03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    Tsp_08777
Ribosome biogenesis [BR:tsp03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    Tsp_08777
SSDB
Motif
Pfam: DEAD Helicase_C ResIII SbcC_Walker_B
Other DBs
NCBI-GeneID: 10897793
NCBI-ProteinID: XP_003374049
Position
Unknown
AA seq 693 aa
MSIVEEKKYFENVPKKISIAGKASLIWEMNNRGKKKSKTPLFNPDFVFNVTSNTVFEEKL
SFLRTLAKQGTSIDLNSRISETRQKFDEKLRQCDARTRDKVELSDSGSEPSSEDEKVQGG
SDLIREKLRKGKPAKEKEDNFFDNRSKYNISLTFEEMNLSRSLNKAISSMNYVNPTPIQS
ACIPVALLGKDICACAATGTGKTCAYMIPILERLLFKPVGRRITRVLVMVPTRELAMQVY
ETGTTLAKYTSISIALSTGGMDLKSQEAALRLNPDVVIATPGRLIDHLHNSPGFNLNGVE
ILVLDEADRMLDEHFEEQMLEIMRLCSPTRQAMLFSATMTDKVKDLASVSLKKPVKLFVN
ENTEMALNLRQQFVRIRKERECSREASLAALLKRSFTSKVLLFAGTKEVCHRLRLLLGLL
GIRVAELHGNLSQAQRIDALEQFKKGVVDVLVATDVAARGIDVQGVKTVINYQMPHVFKL
YVHRVGRTARAGRSGCAVSFVSEDDRKLVKEIVKHCPTSIKRRILNKDAVESCQRMIDEL
LPEIDRIVEEEKQERQLSIAEKQIAQAKAKLENDHHQAGATTSSKANNNPQRVWFQTPVA
QKLEKVKNKQLYKEALRKSSGAKQKSTDVKTRKVSTTTTTIIIKKLSDAQDESGGRFEKL
IDYQVRAAKRKRRQARLRACVENAPKMAAKNGN
NT seq 2082 nt   +upstreamnt  +downstreamnt
atgagtattgttgaggaaaaaaaatattttgagaatgtaccaaagaaaatttccattgct
ggcaaagcttcactcatctgggaaatgaataatcgcggtaagaaaaagtcaaagacccca
ttattcaacccagatttcgttttcaatgtaactagcaatacggttttcgaggagaagcta
agttttttgagaacgttagcgaagcaaggcacaagtattgatttgaattcgcgaatttcg
gaaactcgtcagaaatttgacgaaaaattacgtcagtgtgatgcccggacacgagacaaa
gtcgagttatcagattctggcagtgagccgagcagtgaagacgaaaaagtgcagggtggt
tcagatttgattcgtgaaaagctcagaaaagggaaacctgcgaaagaaaaggaagacaac
ttttttgataacagatctaagtacaacatttcattgacatttgaagaaatgaatttgtct
cgatcattgaataaggcaatttcatcgatgaactacgttaatcccactcctatccaaagt
gcatgcattccagtggcattacttggaaaggacatttgtgcctgcgctgctactggaaca
ggcaaaacttgcgcttacatgataccaattttggagcgattgttgttcaaacctgtcggc
cggcggattacacgcgtgcttgtgatggttccaacgcgtgaattggctatgcaagtgtac
gaaactggtacgactttggcgaagtacacttctatcagcatcgcactgagtacaggtggg
atggatttgaaatcccaagaagccgctttgcggctcaatccagacgtggtcattgcaacg
ccgggacgtctaattgatcatttgcataatagtccgggcttcaatttgaacggggttgaa
attcttgtactggacgaagcggacaggatgttggacgaacattttgaagagcaaatgttg
gaaatcatgcgactctgttcaccaactcgtcaagcgatgctcttttccgcaacaatgact
gataaagtgaaagatttggcgtcggtttcgctgaaaaagccagtgaaattgtttgtgaac
gaaaatacggaaatggcgttgaatttgagacaacagtttgtccgcattcggaaggaacgt
gaatgcagtcgtgaagcaagtttggccgctttgttgaaacgttcttttacaagcaaagtg
ttgttgtttgccggcacgaaagaggtctgtcatcgtttgcgactgttgctcggtttgctt
ggaatacgtgtcgcagaattgcacggcaatttatcccaagctcagcgcattgatgctttg
gaacagttcaaaaagggtgtggtcgacgtgctcgtcgcaactgacgtcgccgccagaggc
atcgatgtccaaggcgtgaaaacggtgatcaattatcaaatgccgcatgtattcaagctt
tacgtgcatcgcgtcgggcgtacggccagggctggtcgcagtgggtgtgcagtttcgttt
gtttccgaggatgatcgtaaattggtaaaagaaattgtcaaacactgtccgacgagcatc
aagcgacgcatattgaataaagatgcggtggaaagttgtcagaggatgatcgacgaactg
cttccagaaattgaccgcattgttgaagaagagaaacaagaacgccagttgtcgattgcg
gagaaacaaattgcccaggcgaaagcgaagcttgaaaacgaccatcatcaagccggcgcc
actacgagctcgaaggcgaacaataatccccaaagggtgtggtttcagacgccggtcgct
cagaagctcgaaaaagttaaaaacaaacagctgtacaaggaggcgttgagaaaaagcagt
ggcgctaagcaaaagtcgacagatgtgaaaacgcgaaaggtatcaacaacaacaacaaca
ataataataaaaaagttgtcagatgcacaggacgaaagtggaggacggtttgaaaaattg
atcgactatcaagttcgtgccgcgaagcgaaaacgccgacaagctcgactacgtgcgtgc
gttgaaaacgccccaaagatggccgctaaaaatggtaattaa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (29)   

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