KEGG   Trichinella spiralis: Tsp_11619
Entry
Tsp_11619         CDS       T01609                                 
Name
(RefSeq) MutS protein
  KO
K08740  DNA mismatch repair protein MSH4
Organism
tsp  Trichinella spiralis
Brite
KEGG Orthology (KO) [BR:tsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tsp03036]
    Tsp_11619
Chromosome and associated proteins [BR:tsp03036]
 Eukaryotic type
  Meiosis-specific proteins
   Others
    Tsp_11619
SSDB
Motif
Pfam: MutS_V MutS_III MutS_II Rad17
Other DBs
NCBI-GeneID: 10912997
NCBI-ProteinID: XP_003371532
UniProt: E5SRR0
Position
Unknown
AA seq 1013 aa
MTDSQQCISPISKALDLFNDDEDSATSYSSLSQSFSPNSKYKTVSENATNSNVSDVQQTP
KSKNAKSTNCLRTVQLSDVSNFRTPHSENNEIEKNETSGDVVEENFKTPLSKLITSIKRN
SLRSTYSSEASLLFSSEQQVSSESTIHRPSASTSSSQSLPLREQSTNITEENGINGSSKQ
FGGYFRTKSMLVRKFSSCSTNRTSTSTPRSGGGKPIAKSQILIALTQGRGLAKGEIGIAY
MDLLLPELCLTQFSDNASYAELKIKLEILNPAAIILPDSAMLNDGNTKMLLLALKRAFPK
TEISSVSRKCFNETRGLEELQRIMLKECLDFEKNVEEKYYALAAAAALIDYIERVENIIF
APQSIRIVYKGLEKSLKIDSNAAKDLELIVSLKSSESVKGSLLGILNHTYTFSGARLLRA
SILQPSSDLQTINERLDVLEEILNNGRVKASTALTSLRSAISRMTDVERLIGFCIHIGEE
DCGRFAEYRIKQLLCLKNTLELVEPLRQILSTFKTPLLKEYFEVLGDKRLKKISEKISHY
IYDDTMLQKGALNLRNQICFAIKPNVNGLLDVVRRAYSEFQSDVEAYHSMFCQETQLPFK
LSFSIARGYYLALPNNGTNVPANVLDRLLKVVRRGGNLICTTREMIKLNDRIEEIVRDIL
FISDNVLNQLLTEMREDVISLYYLCDVISSLDVILSLSKCCERFQWIRPEFTDSLAVEKA
RHPVLELSLQSDFVANDIYAGPDSNFLILSGPNMSGKTTYLKMVGVLQVLAQIGSFVPAK
YASFKLCNQLFTRLYHNDSLETNSSSFMVEMKDCKYILEKCTRDSLVLIDELGRNTSDEE
GFATCVAISEELIATKATVFFATHLLDLAELDRLYPCVDSYHFVANQGAINRRIHVTHNL
KRGLYCGPAYGLELAELAPFPREIVERAKCWLRGWRNEKQNNESQLSSELKKQRAVMRFG
YRIIQAAQFHDFDPVNVLAYFQHIKKQYLDDIGVANSISTGDDDDETNPKESH
NT seq 3042 nt   +upstreamnt  +downstreamnt
atgacagattctcagcagtgcatttcgccaatatcgaaagcgttggatttattcaatgat
gatgaagacagtgcaacttcgtactcaagtttatcacagtcgttttctccaaattcaaaa
tacaaaacagtgtcggaaaatgcaacaaattccaacgtttctgatgtgcagcaaactcca
aaatcaaaaaatgctaagtcgacaaactgcttgagaactgttcaattgtcagatgtgtcc
aattttcgtactccacattcggaaaataatgaaattgaaaagaatgaaacgtccggagat
gttgtcgaggaaaatttcaaaactcctctatcaaagctgataacttcaataaaaaggaat
tcattgcgcagtacatattcgtcagaagcttctttattgttcagcagtgaacaacaagtg
tcgtcagaatcgacaattcatcgaccaagtgcgagcacttcttccagtcaatcactaccg
ttacgagaacaaagtacaaatattactgaggagaatggaatcaacgggagcagcaagcaa
tttggtggatattttaggacgaaaagtatgcttgtgaggaaatttagttcatgttcaacg
aatagaacatcaacgtccactcctcggagtggaggtggaaagccgattgcaaaaagtcaa
attttaatcgctctaacacaaggccggggacttgcgaaaggggaaattggcattgcctat
atggatctgttgcttcctgaattgtgcttgacgcaattcagtgacaatgcaagctatgct
gagctgaagattaagctggaaattttgaatcctgctgcaataattttgccagattccgct
atgctaaacgatggtaatacgaaaatgttgttgttagctttgaaacgggcttttccaaaa
accgaaatttcatccgtcagtcggaaatgtttcaacgaaacgcgcggtcttgaagaattg
caaagaattatgctgaaagagtgtttagattttgaaaagaatgtcgaagaaaaatattac
gcattagctgctgcagcagctttgattgattacatcgaaagagttgaaaatattattttt
gctccacagtcaattcgaattgtttacaaaggattagaaaaatctttaaaaattgattca
aatgcggcaaaagatttggaattgattgtcagtttgaaaagttccgaaagtgtgaaagga
agtttattaggaattttgaatcatacttacacgttcagcggtgctcgattgttgcgtgct
tcaatattacaaccgtcttcagatttgcagaccataaacgaacgtttggacgttttggag
gaaattttaaacaatggacgtgtaaaagcttcaactgctttgacgagtttacgttcagct
ataagtcgaatgaccgacgtggaacgtttgattggattttgcatacacattggcgaagaa
gattgtggtcgatttgcagaatatcgaattaagcaacttttatgtttgaaaaataccctg
gaattagtcgaaccacttcgacaaattttgtccactttcaaaactccacttttgaaagaa
tattttgaagtacttggtgataaacgtcttaaaaagatttctgaaaagatcagccactat
atatatgatgatacaatgttacaaaaaggtgctttgaatttgagaaatcaaatatgtttt
gcaatcaagccgaatgtcaatggactgttggatgttgttcgtcgagcttacagtgaattt
caaagtgatgttgaagcatatcattcaatgttttgtcaagaaactcaacttccatttaaa
ttatcattttccattgctcgtggatattatttggctttgcccaacaacggcaccaacgta
ccggctaatgttttggatcgactgttgaaagtggtccgacgaggtggtaatttaatttgt
acaactcgagaaatgatcaaactgaatgatcggatagaagaaattgtacgtgatatttta
ttcattagtgataacgtgttgaatcaattattgaccgaaatgagggaagatgtgatcagc
ttgtattatttatgcgatgtgatatcatcgttggatgtgatattgtcgctgagtaaatgc
tgcgaacgttttcaatggatacgaccagaattcacggacagtttagctgttgagaaagct
cgacatccagtattggaattgtcattgcaatctgattttgtagccaatgatatttatgct
ggacctgattcgaattttctcattcttagcgggccgaacatgagtggcaagacgacttat
ttaaaaatggtcggcgtgttgcaagtacttgcgcagattggttcttttgttccggctaaa
tatgcgtcgttcaagctttgcaatcagcttttcactcgtctgtatcacaacgacagtttg
gaaacaaattcatcgtctttcatggttgaaatgaaagattgcaaatacattttggaaaag
tgtacccgtgattcgcttgttttgatcgacgaattgggacgaaacacttcggatgaagaa
ggtttcgctacatgcgttgctataagtgaagaattgatcgcaaccaaagctacggtattt
tttgccactcatctattggatctggccgagcttgatcgtttatatccatgtgtggacagc
taccattttgtcgcaaatcaaggtgctatcaatcgcagaattcacgtgacgcataatttg
aaacgaggactctactgtggacctgcttatgggttagaattagccgaattggctccattt
ccaagggaaattgttgaaagagcaaaatgttggcttcgtgggtggagaaatgaaaagcag
aacaatgaatcacagttgtcgagtgagttgaaaaagcaacgggcagtgatgcgtttcggt
tacaggataatccaggcggctcagtttcacgattttgatccagtgaacgtgctcgcctac
tttcagcacatcaagaaacaatacttggacgatattggcgtggctaattccatctctact
ggagacgacgacgacgaaaccaatccaaaagaatctcattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (35)   

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