KEGG   Thamnophis sirtalis (common garter snake): 106556879
Entry
106556879         CDS       T06107                                 
Symbol
DDX56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56 isoform X1
  KO
K14810  ATP-dependent RNA helicase DDX56/DBP9 [EC:5.6.2.7]
Organism
tsr  Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tsr03009]
    106556879 (DDX56)
Enzymes [BR:tsr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     106556879 (DDX56)
Ribosome biogenesis [BR:tsr03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    106556879 (DDX56)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22
Other DBs
NCBI-GeneID: 106556879
NCBI-ProteinID: XP_013931390
UniProt: A0A6I9Z6C9
Position
Unknown
AA seq 554 aa
MAAEGSFGQMGLDARLLQAVAELGWAAPTPIQAKAVPLALEGKDLLAKARTGSGKTGAYA
LPLLQRLLDAKAAALVTEQAVRGLVLVPTKELARQVLQMLRRLAAYCARDIRTLDLAGPE
DLGAQRPLLMEKPDVVIGTPSRVLAHVQMQNLRLQNSLEILVIDEADLLFSFGFEEDLKN
LLCHLPKIYQTFIMSATFNEDVQTLKELVLHNPVTLRLQEAPLPDSSQLSQFQIQCETEE
EKFLLLYALLKLSLVRGKVLLFVNRIDRCYRLKLFLEQFGIAACVLNSELPAQSRCHIIS
QFNRSVYNYIIATDEQHLAEPEESGRKRKKGTKGEKGKDQEYGVSRGIDFHNVSAVFNFD
FPPSFESYIHRAGRTARVHNPGTVLTFVLPSERLLLAKIEEVLTAESTSKCTLTPYQFRM
REIEGLRYRCQDAMRSVTKQAIKEARLREIKEELLNSEKLKSLRVSGQQSQPWLGNASGG
NARPPLARARGTPCTASGAPRRNFGPWPRPNKPPAPASGGMSERDRNWLPFLRCQKCHEA
ALTHFQFFFFLRVA
NT seq 1665 nt   +upstreamnt  +downstreamnt
atggcggcggaggggagcttcggccagatgggcctggacgcgcggctcctgcaggcggtg
gcagagctgggctgggccgcgcccacccccatccaggcgaaggcggtgccgctggcgctg
gaggggaaggacctgctggccaaggcccgcaccggctccgggaagacgggcgcctatgcc
ctgccgctgctgcagcgcctgctggacgccaaggcggcagcgctggtgacggagcaggca
gtgcgcggcctggtgctggtgcccaccaaagagctggcccggcaggtgctgcagatgctt
cggaggctggccgcctactgcgctcgggacatccgcaccctcgacttggccggtccagag
gacctgggcgcccagaggcccctcttgatggagaaaccagatgtggtgataggaacgcca
tcacgggttttggcacatgtacaaatgcaaaacttgagactgcagaattcgttagaaatt
ttggtgatagatgaagctgacttgcttttttcatttggctttgaggaagatttgaaaaat
ctcctctgccatttgcccaagatctaccagaccttcatcatgtcagctaccttcaacgag
gatgtccagacactgaaggagctggtactgcacaacccggtgactctcaggctgcaagaa
gcacccttgccagatagctcccaactgagccagttccagatccagtgcgagactgaagag
gagaaattcttgctcctctatgccctcctgaagctttccctggtgcgggggaaagttctc
ctctttgtcaacaggattgaccgctgctaccgcctcaaactcttcctggagcagtttggg
atcgctgcctgcgtcctcaactcagagctgcctgctcagtcccgatgccacatcatcagc
cagttcaatcggagcgtctacaattacatcattgccacagatgagcagcacctggcagaa
ccagaggagagtggcaggaaaaggaagaagggcacaaaaggagaaaagggcaaagatcag
gaatatggtgtctcccgaggcatcgacttccacaacgtgtctgcggtcttcaactttgat
ttccccccctcctttgaatcctacatccaccgagcaggcaggacagcccgtgttcacaac
ccaggcactgttctgaccttcgtcttgccctctgagcggcttctgcttgccaagattgaa
gaggtgcttacagccgagagcacaagcaagtgcaccttgacgccctaccagttccggatg
agggagatcgagggactccgctaccgatgtcaggatgccatgcggtcagtaaccaagcag
gctatcaaagaagcccgactccgtgaaatcaaagaagaattgctcaactcggagaagctg
aagtccctcagggtctccggccagcagtcccagccctggctgggaaacgcaagcggcgga
aatgcccggcctccactagcaagggccagaggaaccccttgcacagcttcaggagcacca
agaagaaatttcggaccttggccaaggccaaataagccaccggctcctgccagcggtgga
atgagtgaaagagacagaaactggcttccattcctccgatgtcagaagtgccatgaagct
gctctgacccactttcagttttttttttttttaagagtcgcttag

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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