ID A0A1R3IDW4_COCAP Unreviewed; 829 AA.
AC A0A1R3IDW4;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 31.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN ORFNames=CCACVL1_12750 {ECO:0000313|EMBL:OMO80787.1};
OS Corchorus capsularis (Jute).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=210143 {ECO:0000313|EMBL:OMO80787.1, ECO:0000313|Proteomes:UP000188268};
RN [1] {ECO:0000313|EMBL:OMO80787.1, ECO:0000313|Proteomes:UP000188268}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. CVL-1 {ECO:0000313|Proteomes:UP000188268};
RC TISSUE=Whole seedling {ECO:0000313|EMBL:OMO80787.1};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M.;
RT "Corchorus capsularis genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the DNA2/NAM7 helicase family. SDE3 subfamily.
CC {ECO:0000256|ARBA:ARBA00005601}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMO80787.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AWWV01010252; OMO80787.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3IDW4; -.
DR STRING; 210143.A0A1R3IDW4; -.
DR EnsemblPlants; OMO80787; OMO80787; CCACVL1_12750.
DR Gramene; OMO80787; OMO80787; CCACVL1_12750.
DR OMA; FMDYQND; -.
DR OrthoDB; 170190at2759; -.
DR Proteomes; UP000188268; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR GO; GO:0032574; F:5'-3' RNA helicase activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR CDD; cd18038; DEXXQc_Helz-like; 1.
DR CDD; cd18808; SF1_C_Upf1; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 3.
DR InterPro; IPR045055; DNA2/NAM7-like.
DR InterPro; IPR041679; DNA2/NAM7-like_C.
DR InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR InterPro; IPR049080; MOV-10-like_beta-barrel.
DR InterPro; IPR026122; MOV-10/SDE3_DEXXQ/H-box.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047187; SF1_C_Upf1.
DR PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR PANTHER; PTHR10887:SF322; RNA HELICASE MOV10L1; 1.
DR Pfam; PF13086; AAA_11; 2.
DR Pfam; PF13087; AAA_12; 1.
DR Pfam; PF21634; MOV-10_beta-barrel; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000313|EMBL:OMO80787.1};
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Helicase {ECO:0000313|EMBL:OMO80787.1};
KW Hydrolase {ECO:0000313|EMBL:OMO80787.1};
KW Nucleotide-binding {ECO:0000313|EMBL:OMO80787.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000188268}.
FT DOMAIN 199..278
FT /note="Helicase MOV-10-like beta-barrel"
FT /evidence="ECO:0000259|Pfam:PF21634"
FT DOMAIN 326..414
FT /note="DNA2/NAM7 helicase helicase"
FT /evidence="ECO:0000259|Pfam:PF13086"
FT DOMAIN 446..514
FT /note="DNA2/NAM7 helicase helicase"
FT /evidence="ECO:0000259|Pfam:PF13086"
FT DOMAIN 522..725
FT /note="DNA2/NAM7 helicase-like C-terminal"
FT /evidence="ECO:0000259|Pfam:PF13087"
FT REGION 780..829
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 829 AA; 94404 MW; 6419F87B05C80D4D CRC64;
MGTVSEKWDD EYSVIGEKGE LEFIDYEDDK SKPPSEDSDS NAREGFVEFF NLEDRMVQPG
ETLTIWLSCK ANVIGLHTTA VHFDTGDDTI ERMAILLVED KISQSLASKR PYSRGQKKKQ
FAVDRFVRGS RPATARAMDR GVKNRLPWYN IPEDIRELVE SKQTPDAITA GLTRDNYASY
FKNLLFLEEL QVEEDMRAYS MENINMRRSG KYLSLKVPGL AERRPSLVHG DNIFAKLASE
DTVYEGFVHR VEADEVYLMF APKLHLCHID ENLYNVQFTH NRINFRRLYQ AIDAAEGLEL
NFLFPSGFPE KRLIETTPLV PISCTLNEEQ MCSIEMILGC KGGPPYVIYG PPGTGKTMTL
VEAILQLYKT QDSSRILVCA PSNSAADFIL EKLLEAESVE LKNNKIFRLN AATRPYEDVN
PDFLQFCFFD DNIFKCPSLC ALVCYRIIIS TYMSSSLLYA ENVNKGHFSH IFLDEAGQAS
EPESMIPIAN LCQRDTVVVL AGDPMQLGPV IHSREAERYG LGKSYLERLC ECELYSEEDA
NYVTKLVRNY RCDPEILYLP SQLFYNGQLI PCKDDIGSLL KSVKFLPNKE FPVFFFGIQG
CDEREESNPS WFNRIEASKV VEVVKSLTES GTLSQEDIGV ITPYRQQVLK IKKAFENLDM
PEIKVGSVEQ FQGQERKVII ISTVRSTVKH NEFDRTHCLG FLSNPRRFNV AITRAISLLI
IIGNPHIIAK DFYWNKLVWR CVDNNSYQGC NLPERQDEGD EEVPNEEDCW NYGEEIPAGS
GWDENIPTGS GWNHGEYVPN PTGWDFDDTT QGEIPKPVTD EAEWSDGWK
//
