ID A0A1R3KUQ3_9ROSI Unreviewed; 1095 AA.
AC A0A1R3KUQ3;
DT 12-APR-2017, integrated into UniProtKB/TrEMBL.
DT 12-APR-2017, sequence version 1.
DT 27-MAR-2024, entry version 27.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN ORFNames=COLO4_04279 {ECO:0000313|EMBL:OMP10777.1};
OS Corchorus olitorius.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus.
OX NCBI_TaxID=93759 {ECO:0000313|EMBL:OMP10777.1, ECO:0000313|Proteomes:UP000187203};
RN [1] {ECO:0000313|Proteomes:UP000187203}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. O-4 {ECO:0000313|Proteomes:UP000187203};
RA Alam M., Haque M.S., Islam M.S., Emdad E.M., Islam M.M., Ahmed B.,
RA Halim A., Hossen Q.M.M., Hossain M.Z., Ahmed R., Khan M.M., Islam R.,
RA Rashid M.M., Khan S.A., Rahman M.S., Alam M., Yahiya A.S., Khan M.S.,
RA Azam M.S., Haque T., Lashkar M.Z.H., Akhand A.I., Morshed G., Roy S.,
RA Uddin K.S., Rabeya T., Hossain A.S., Chowdhury A., Snigdha A.R.,
RA Mortoza M.S., Matin S.A., Hoque S.M.E., Islam M.K., Roy D.K., Haider R.,
RA Moosa M.M., Elias S.M., Hasan A.M., Jahan S., Shafiuddin M., Mahmood N.,
RA Shommy N.S.;
RT "Corchorus olitorius genome sequencing.";
RL Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC Evidence={ECO:0000256|ARBA:ARBA00001556};
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OMP10777.1}.
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DR EMBL; AWUE01011287; OMP10777.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1R3KUQ3; -.
DR STRING; 93759.A0A1R3KUQ3; -.
DR OrthoDB; 53793at2759; -.
DR Proteomes; UP000187203; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR CDD; cd17917; DEXHc_RHA-like; 1.
DR CDD; cd00048; DSRM_SF; 1.
DR CDD; cd18791; SF2_C_RHA; 1.
DR Gene3D; 1.20.120.1080; -; 1.
DR Gene3D; 3.30.160.20; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014720; dsRBD_dom.
DR InterPro; IPR048333; HA2_WH.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR PANTHER; PTHR18934:SF229; ATP-DEPENDENT RNA HELICASE DHX30; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00035; dsrm; 1.
DR Pfam; PF21010; HA2_C; 1.
DR Pfam; PF04408; HA2_N; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00358; DSRM; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF54768; dsRNA-binding domain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS50137; DS_RBD; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000187203};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00266}.
FT DOMAIN 211..378
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 467..641
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT DOMAIN 1000..1065
FT /note="DRBM"
FT /evidence="ECO:0000259|PROSITE:PS50137"
SQ SEQUENCE 1095 AA; 122865 MW; DC7C6CF7AB62FC8C CRC64;
MSLRPTSLYL SNTPNNLLKP SFFSSLSRAQ PAVSCRRFHL RHGLVRCSAS RPAAASSSKT
IGLDWRNISL PYLQQQSSNY GRYAYQDVSS DESDLEFGSP QSQMVILPLG LQRDVNFHLR
AYLSCKAMSS GSFSDKPLPV SSSGGRISAD EVSIEQREPF TQNSVVMERI LRRRSLQIRN
KQQEWLDSPE GQKMLEFRRS LPAYKERDAL LNAISQNQVV VVSGETGCGK TTQLPQYILE
SEIEAARGAS CSIICTQPRR ISAMAVSERV AAERGEKLGE SVGYKVRLEG MKGRDTRLLF
CTTGILLRRL LVDRDLRGVT HVIVDEIHER GMNEDFLLIV LKDLLPRRPE LRLILMSATL
NAELFSSYFG GAPTLHIPGF TYPVRAHFLE NILEVTGYRL TPYNQIDDYG QDKTWKMQKQ
AQSFKKRKSQ LSSAVEDALE TADFRGYSLR TRESLSCWNP DSVGFNLIEH VLCHIVRQER
PGAILVFMTG WDDINSLKDQ LQAHPLLGDP SKVLMLACHG SMPSSEQRLI FEKPEDGVRK
IVLATNMAET SITINDVVFV VDCGKAKETS YDALNNTPCL LPSWISKAAA RQRRGRAGRV
QPGECYHLYP KCVYDTFADY QLPELLRTPL QSLCLQIKSL ELGGITEFLS RALQPPELLS
VQNAVEYLKI IGALDENENL TALGRNLSML PVEPKLGKML ILGAIFNCLD PIMTIVAGLS
VRDPFLMPFD KKDLAESAKA QFSGQEYSDH IALVRAYEGW KEAERERSGY EYCWKNFLSA
QTLKAIDSLR KQFFYLLKDT GLVDQNLENC NKWSRDEHLI RAVICAGLFP GICSVVNKEK
SIALKTMEDG QVLLYSNSVN AGIPKIPYPW LLFNEKVKVN SVFLRDSTGV SDSVLLLFGG
SISRGGLDGH LKMLGGYLEF FMKPALADTF LSLKRELEEL IQTKLLNPKV DIQSHSELLS
AVRLLVSEDQ CEGRFVFGRQ VPVSKKTVKE KTVDIGGGDN PKSELQTLLV RARHGAPIYK
TKQLKNNKFR STVIFNGLDF TGQSCSSKKL AEKDAAAQAL LWLRGEDDSS YRANDHASVL
LKKSKKRRNS FHDFK
//
