KEGG   Variovorax paradoxus S110: Vapar_5823
Entry
Vapar_5823        CDS       T00916                                 
Name
(GenBank) TRAG family protein
  KO
K03205  type IV secretion system protein VirD4 [EC:7.4.2.8]
Organism
vap  Variovorax paradoxus S110
Pathway
vap03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vap00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Vapar_5823
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vap02044]
    Vapar_5823
Enzymes [BR:vap01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.8  protein-secreting ATPase
     Vapar_5823
Secretion system [BR:vap02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   Vapar_5823
SSDB
Motif
Pfam: T4SS-DNA_transf TrwB_AAD_bind TraG-D_C ABA_GPCR
Other DBs
NCBI-ProteinID: ACS22412
UniProt: C5D068
Position
2:528764..530719
AA seq 651 aa
MTLAPRYEGLPSPFRIAVALLIAALVGMYVAGQAFLFAMNLPPQHATLLTLHEYWQAYGE
RPDVRRVLIASLVGSQGLMLGLVGIAMLPRRRPLHGNARFASRREIARSGLLNEHGIILG
RLGNRYLVLPGQQGVALEAPPRSGKGVGVVIPNLLNWPGSAIISDIKGENFMRTAGFRAA
HGQQVHLFDPLSERERSARWNPLGYVSETPYRCIDDLQRIGTMLFPDPQAGDPFWTSSAR
SLFLGIALYLFETKGATRTLGEILRQGMASDAEGFQKHWKRVIDACERAGYPLSQEAVQS
LYDVIDLAPTTASSIRKTFTSRLDLWLNPMIDATTSANDFDLRALRKHPISIYVQINPDN
IARLQPLLNLFFQQAIGLQTRELPENNPELRHQVLLMLDEFPALGRIPVIADSTAFLPGY
NVRAVIIVQSNSQLIEKYGIEGAKSIRKMLAARIVFPPKEYEDAEAISRELGTYTVRQKN
ISRPMWGGANKEPTVTISEQPRRLLLPQEVKELGPDRMILFYEGLRPVLAHRILYFRDRL
FAPRELPPPLVPKLNVDKPGGAATTVPAAMLDDRKDTSGTGPGSLSNATPPDGGAAPTAR
QAAAVASNVLNDDLKLDDFSFDFDDVEIPTEKLSDEDLKRHADEFMARILD
NT seq 1956 nt   +upstreamnt  +downstreamnt
atgaccctggcaccaagatacgaaggcttgcctagtcccttcagaatcgcggtcgcgctg
ctgatcgcggcgctggtcggcatgtacgtcgccggccaagcgttcctgttcgcgatgaat
ctgccgccacagcacgccacgctgctgacccttcacgagtactggcaggcctacggcgag
cggccggacgtgcgccgtgtcctcattgcgtcgctggtcggctcccaggggctgatgctc
ggtctggtcggaattgccatgctgccccgccgccggccgctgcatggaaatgcccggttt
gcgagccgtcgcgagatcgcgcgatcgggcctcctgaacgagcacggcatcatcctcggg
cggctcggcaatcgctacctggtgcttcccggccagcagggcgtcgcactcgaggcaccg
ccgcgcagtggcaagggcgtcggcgtggtcatccccaatctgctgaactggcccggctcg
gccatcatcagcgacatcaagggcgagaacttcatgcgcaccgccggcttccgtgcggcc
catgggcagcaggtgcacctgttcgatcccctgtccgagcgcgagcgctcggctcgctgg
aatccgctcggctatgtctccgagacgccctaccgctgcatcgacgatctgcagcgcatc
ggcacgatgctctttcccgatccacaggccggcgatcccttctggacctcctcggcccga
tctctattcctgggcattgccctctatctcttcgagaccaaaggggccacgcgcaccttg
ggcgagatcctgcgccagggcatggccagcgatgccgagggctttcagaaacactggaag
cgtgtcattgatgcctgcgagcgcgccgggtatcccttgtcgcaggaagcggtgcagagc
ctctacgacgtgatcgacttggcaccgaccacggcctccagcatccgcaagaccttcacc
agccgcctggacctgtggctcaacccgatgatcgatgcgaccacctcggccaacgatttc
gacctgagggcactgcgcaagcatccgatctcgatctatgtccagatcaaccccgacaac
atcgcccggctgcagccgctgctgaacctgttcttccagcaggcgatcggcctgcaaacg
cgggaactccccgagaacaatcccgagcttcgccaccaggtgctcctgatgctcgacgaa
tttccggcgctcgggcgcattcccgtcatcgccgactccacggccttcctgcccggctac
aacgtgcgcgccgtaatcatcgtccagtccaattcgcaactgatcgagaagtacggtatc
gagggcgccaagtcgatccgcaagatgctcgcggcgcgcatcgtgttcccacccaaggag
tacgaggacgccgaggccatctcgcgagagctggggacctacaccgtccgacagaagaac
atcagccgcccgatgtggggcggtgcgaacaaggagcccaccgtgaccatcagcgagcag
ccgcgccgcctgctgctgccccaggaggtcaaggaactgggaccggaccggatgatcctg
ttctacgaaggcctgcggccggtgctggcgcatcggatcctctactttcgcgacaggtta
tttgccccacgcgaactgccgccaccactggtgccgaagctgaacgtcgataagcccggc
ggcgccgccacaaccgtgccggcggcaatgctcgatgacaggaaagacacgtccggcaca
ggtcccggatccctctccaacgccacgcctccggacggtggcgccgcgccgacggcccgg
caggccgctgccgtagccagcaatgtattgaacgacgacttgaagttggacgacttctcg
ttcgacttcgacgacgtggagattcccacggagaagctcagcgacgaggacctgaagcgc
cacgccgatgagttcatggcgcgaatcctggactga

  All links  
Gene (13)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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