KEGG   Vibrio cholerae O1 MJ-1236: VCD_001395
Entry
VCD_001395        CDS       T00903                                 
Name
(GenBank) formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
vcj  Vibrio cholerae O1 MJ-1236
Pathway
vcj03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:vcj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    VCD_001395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vcj03400]
    VCD_001395
Enzymes [BR:vcj01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     VCD_001395
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     VCD_001395
DNA repair and recombination proteins [BR:vcj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     VCD_001395
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS Auto_anti-p27 COOH-NH2_lig NFACT_N
Other DBs
NCBI-ProteinID: ACQ59564
Position
1:complement(410812..411621)
AA seq 269 aa
MPELPEVEVSRLGISPHLVGGTIQSLVLRTPKLRWPIPQELKQLEGQTILAIHRRAKYLI
IETAVGSAIVHLGMSGSLRILDGDFPAAKHDHVDLVMTSGKRLRYNDPRRFGAWLWCAPD
ESHEVLGRLGPEPLTEAFNAEYMMDKARNKRIAVKAFIMDNAAVVGVGNIYANESLFTSR
LHPLRPAHSLSLEEWQTLVANIKQVLQVAIKQGGTTLKDFTQSDGKPGYFAQELQVYGKA
KQPCPHCGEPLCEQKIAQRNTFFCPQCQH
NT seq 810 nt   +upstreamnt  +downstreamnt
atgcctgaattacctgaagttgaagtcagccgtttagggatctccccacatttggtcggt
ggcaccattcaatccttagtgttacgtacgcccaagttgcgctggcctatccctcaagag
ctgaaacagcttgaagggcagaccattctcgcgattcatcgtcgagccaagtatctgatt
attgaaaccgccgtcggcagtgcgattgtgcatttgggtatgtctggctcgctgcgtatt
ttggatggcgattttcctgccgcgaaacacgatcatgtggatctggtgatgaccagcggc
aaacggctgcgctataacgatccgcgtcgcttcggggcttggttatggtgtgcgcctgat
gagagccatgaagtgctcgggcgtttggggcctgagccgttgaccgaagcttttaacgct
gaatatatgatggacaaagcgcgcaacaaacgcattgcagtcaaagcttttatcatggac
aacgcagcggtcgtgggtgtggggaatatctatgctaatgaatcgctgtttacatcacgc
ctccatccactacgccccgctcattcgctgagcttagaggagtggcaaaccttagtggcg
aacatcaaacaagtgctgcaagtggcgattaagcaaggcggcaccacactgaaagatttt
acccaaagcgatggtaagccgggctatttcgcgcaagagctgcaagtgtatggcaaagcc
aaacagccttgcccccattgtggagagccgctttgcgagcagaaaattgctcagcgcaat
acctttttctgcccgcagtgccagcattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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