KEGG   Variibacter gotjawalensis: GJW-30_1_00121
Entry
GJW-30_1_00121    CDS       T05320                                 
Symbol
ykoU
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
vgo  Variibacter gotjawalensis
Pathway
vgo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:vgo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GJW-30_1_00121 (ykoU)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vgo03400]
    GJW-30_1_00121 (ykoU)
Enzymes [BR:vgo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GJW-30_1_00121 (ykoU)
DNA repair and recombination proteins [BR:vgo03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GJW-30_1_00121 (ykoU)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: BAT57614
UniProt: A0A0S3PPB7
Position
complement(146407..148995)
AA seq 862 aa
MALDTYRKKRDFSKTAEPRGKKKMPKKTGNSFVVQKHAARRLHYDFRLEMDGVLKSWAVA
RGPSLVPGEKRLAVETEDHPLEYGDFEGTIPKGEYGGGSVIVWDRGTWTPEFDADFGYKK
GHLEFELEGEKLSGKWHLVRMARRRGEKRDNWLLIKVEDDAARTASDPDILEESPESVKT
GRVVEDLDGEAPGWSSKTGKIDRKEPAKKAKTSKKKSAKATAEAPGTQAVAPQAVDPSQI
KGAKKAALPNVIPPALASLAEKPPSGDRWVHEIKFDGYRLMVRIEAGRVKLLTRTGLDWT
KRFGKELVAAFQDLPIGKAMLDGEVVVERDNGASDFSALQADLSEGRGDRFIYYAFDLPY
IDGYDLTGANLLDRKAALSQLVGDGSGTIRYSAHFEADGPTVLEHASRLGLEGIVSKASD
APYREGRSKSWLKSKGSLRQEFVIGGYVPSSTSRKAIGALSLGVYEDGKLRHVGRVGTGF
SHKVSEQLFTRLERLRGDSPFAGRLDAVAARGVRYVRPELVADVEFRAWTADGNIRHASF
RGLREDKDADDIVLETGMPKAAKTAKAKSTPDVTLTHPDRVYWPDEGVTKQGLADYYAEV
WDHMAPFIVGRPLALLRSPDGITGKGFFQKHAWKGLNKSIDLVPDPKEKGEEPLIAIHDL
TGLTALVQAAVLEIHPWGSTVKDWEHPDTLILDLDPGDGVSWQEMIAAAHEAKERLEAVG
LAAFVKTSGGKGLHVVSPLKPKGAWPDLKEFTKAMADAMASDSPNKYVSTIAKAKRGGKI
LIDYLRNQRGQTAVAAYSTRARPGAAVSMPLAWDELSSVGPAYFTIVNAPQRLAALKRDP
WATFRKSEAPLAIKTSAKKVRK
NT seq 2589 nt   +upstreamnt  +downstreamnt
atggcgctcgacacctatcgcaagaagcgcgatttctcgaagacggccgagccgcgcggc
aagaagaaaatgccgaaaaagaccggcaacagcttcgtcgtgcagaagcacgctgcgcgg
cgactgcattacgatttccgccttgaaatggacggcgtgctgaaaagctgggccgtcgcg
cgggggccgagcttggtgccgggggagaaacgcctcgccgtcgaaacggaagatcacccg
ctcgaatacggcgatttcgaaggcactatcccgaaaggcgaatacggcggcggcagcgtg
atcgtttgggatcgcggaacgtggacgccggaatttgacgccgacttcggatacaagaag
ggccacctcgagttcgaactcgaaggcgagaagctttccggcaagtggcatctcgtgcgc
atggcgcgacgccgcggcgagaagcgcgacaattggctgttgatcaaggtcgaagacgac
gctgcgcgaaccgcgagcgatccggacatcctcgaagagtcgccagaatccgtgaagacg
ggccgtgtcgtcgaagatctcgacggcgaagcgcccggctggtcgtcgaagaccggcaag
atcgatcgcaaagagccggccaagaaggccaagacgtcgaagaagaagtcggctaaggct
acagctgaagcgccggggacccaggcggttgcgccgcaagccgtcgatccctcgcagatc
aaaggtgcgaagaaagccgcgctgccaaatgtcatcccgccagcgctcgcgtcgctcgcc
gagaagccgccgtcaggcgatcgttgggtgcacgaaatcaagttcgacggctatcgtctg
atggtccgcatcgaagctgggcgcgtgaaactgctgacgcgcacggggctcgattggacg
aagcgtttcggcaaggagcttgtcgcggcgtttcaggatttgccaatcggcaaggcgatg
ctggacggcgaagtcgttgtcgagcgtgacaatggcgcatccgacttctcggcgctgcaa
gccgatctcagcgaaggccgcggcgaccgcttcatctactacgcgttcgatctgccgtat
atcgacggttacgatctgacgggcgcaaatctcctcgatcgcaaagccgcgctctcacaa
ttggtcggcgacggtagcggcaccattcgctacagcgcgcatttcgaggcggacggaccg
acagtactcgaacacgcgagccgcctgggcctcgaaggcatcgtgtcgaaagcatctgac
gcgccgtatcgcgaaggacgttcgaaaagctggctgaaatcgaaggggtcgctccggcag
gaattcgtcatcggcggttacgtgccgtcgtcgacctcacgtaaagcaatcggcgctttg
tcgctcggcgtctacgaggatggcaaactccgccatgtcggccgcgtcggcaccggcttc
tcgcacaaagtctcggagcaactctttacccgcctcgaacgtttgcgcggcgatagtccg
ttcgcgggccggctcgatgcggtcgcggcgcgcggcgtgcgttacgttcgtcccgaactg
gttgcggacgtcgaattccgcgcctggaccgccgacggcaacattcgccatgcatcgttc
cggggtctgcgcgaagacaaggacgccgacgacatcgtcttggagacgggcatgccgaaa
gccgcgaagactgcaaaagcgaagagcacgccggatgtgacgctcacgcatccggatcgc
gtttattggccggacgaaggcgtcaccaagcaaggtctcgccgactactatgccgaagtc
tgggatcatatggcgcctttcatcgtcgggcggccgcttgcgctgctgcgcagcccggac
ggaatcacgggcaaaggatttttccagaagcatgcatggaagggcctcaacaagagtatc
gacctcgtgccggaccccaaggagaagggcgaggagccgctgatcgcgatccacgacctc
accgggctcacggcgttggttcaggcagcggtgctcgaaattcatccctggggttcgacc
gtcaaggattgggagcatcccgacacgctgatcctcgatctcgatcccggcgatggcgtt
tcctggcaggagatgatcgcggccgcgcatgaggccaaggaacggctcgaggctgtcggc
cttgcggctttcgtgaagacttccggcggcaagggcctgcatgtcgtctcgccgctgaag
ccgaagggggcttggccggacctgaaggaattcaccaaggcgatggcggatgccatggcg
tcggacagtccgaacaaatacgtctcgacgatcgcgaaagcgaagcggggcggcaaaatt
ctgatcgattacttgcgaaaccaacggggacagacggcggtcgccgcctactcgacccgt
gccaggccaggggctgccgtatcgatgccgctcgcctgggatgagctatccagcgtcggc
cccgcctactttacgatcgtgaacgcgccgcaacgtctggctgcactcaaacgcgatcca
tgggcaacgtttcgtaaatccgaggccccgctggcgatcaaaacttcagcgaaaaaggtg
cgcaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system