KEGG   Vibrio campbellii ATCC BAA-1116: VIBHAR_03393
Entry
VIBHAR_03393      CDS       T00589                                 
Name
(GenBank) hypothetical protein
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
vha  Vibrio campbellii ATCC BAA-1116
Pathway
vha03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vha00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VIBHAR_03393
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vha03019]
    VIBHAR_03393
   03016 Transfer RNA biogenesis [BR:vha03016]
    VIBHAR_03393
Enzymes [BR:vha01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     VIBHAR_03393
Messenger RNA biogenesis [BR:vha03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     VIBHAR_03393
Transfer RNA biogenesis [BR:vha03016]
 Prokaryotic type
  tRNA degradation factors
   VIBHAR_03393
SSDB
Motif
Pfam: RNase_PH PNPase RNase_PH_C S1 KH_1 KH_2 S1_2 SLS1_KH2 DUF3016 DUF5813
Other DBs
NCBI-ProteinID: ABU72340
UniProt: A7MZI2
Position
I:complement(3429379..3431511)
AA seq 710 aa
MFEKPVVKTFQYGNHTVTLETGVIARQATAAVMVTMDDTAVFVSVVGKKEAVEGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVS
VNPDVQPDIPTMIGTSAALAISGIPFNGPIGAARVGHIDGQLVLNPSNTELEASKLDLVV
AGTESAVLMVESEADNLTEEEMLSAVVFGHDQQQAVIKAINEFKAEVATPAWDWVAPAEN
TALVTKIAELAEAKLVEAYQITEKMARYDRIHEIAGEVNEVLLAEDPEANTKEIHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ
RDAQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKSSVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTNTGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
AISGAREDISEFAPRIHTMKISAEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAA
TEGAAAKEAIRRIEEITAEVEVGRIYTGKVARLADFGAFVTVLPGKDGLVHISQIAEKRV
EKVSDYLTEGQEVQVKVLEIDRQGRVRLSMKEAVEKPAEEANDASEAKGE
NT seq 2133 nt   +upstreamnt  +downstreamnt
atgttcgaaaaaccagttgttaaaacgttccagtacggtaaccacacagttactctagaa
actggcgttatcgcacgtcaagctacggctgcagtaatggttactatggacgatacagca
gtattcgtttctgtagtcggtaaaaaagaagcggttgaaggtcaagacttcttccctcta
acagttaactaccaagagcgtacttacgcagcaggtaaaatcccaggtggtttcttcaag
cgtgaaggtcgtccttctgaaggtgaaacgctaacggctcgtctaatcgaccgtccaatc
cgtccactattcccagatgcattcaaaaacgaagtacaagttattgcaacagtagtatct
gtgaacccagacgttcaaccagacatcccaacaatgattggtacgtctgctgcgctagct
atctctggtattccgttcaacggtcctatcggtgctgcgcgtgttggtcacatcgacggt
caactagtacttaacccaagcaacactgaactagaagcatctaagctagacctagttgtt
gcgggtactgaatctgcagtactaatggttgaatcagaagctgacaacctaactgaagaa
gaaatgctatctgctgttgtattcggtcacgatcaacaacaagctgtgatcaaagcaatc
aacgaattcaaagctgaagttgctactcctgcttgggattgggttgctccagcagagaac
actgcgctggtaactaagattgctgaacttgctgaagcaaaactggttgaagcttaccaa
atcactgagaagatggctcgttacgaccgcatccacgagatcgctggtgaagttaacgaa
gtgctgcttgctgaagatccagaagcaaacacaaaagaaatccacactatcttccacgat
ctagagaagacagtggtacgtcgcagcatcatcgctggtaacccacgtatcgacggtcgt
gaaaaagacatggttcgtgcgcttgacgtacgtactggtgttcttcctcgtactcacggt
tcttcactatttactcgtggtgaaactcaggcgctagtaactgcgactctaggtacgcag
cgtgacgctcaaatcattgatgagctaacaggtgagcgtaaagatcacttcctactgcac
tacaacttccctccatactgtgttggtgaaactggttttgtaggttctcctaagcgtcgt
gaaatcggtcacggtaaactggctaaacgcggtatcgcagcagtaatgccttctgttgat
gagttcccatacacagtacgtgttgtatcggaaatcactgaatctaacggttcttcttca
atggcttctgtatgtggtacttctcttgctcttatggacgcaggtgtgccaatcaagtct
tctgttgcgggtatcgcaatgggtcttgttaaagaaggcgacgacttcgttgttctttct
gacatccttggtgacgaagaccacctaggtgacatggactttaaagtagcaggtactaac
actggtatcactgcacttcaaatggacatcaagatcgaaggtatcactaaagagatcatg
caaattgcgcttaaccaagctcaaggtgcacgtaagcacatcctatctgtaatggatgaa
gctatctctggtgctcgtgaagacatctctgaattcgctcctcgcattcacacaatgaag
atcagcgcagagaagatcaaagacgttatcggtaaaggtggtgcagttatccgtgctcta
actgaagagactggtacaactatcgaaatcgaagacgacggtactatcaagattgcagca
actgaaggtgcagcagcgaaagaagctatccgccgtatcgaagagatcactgctgaagtt
gaagtaggtcgtatctacactggtaaagttgcacgtctagctgactttggtgcattcgta
acggttcttccaggtaaagatggtctagtacacatctctcaaatcgctgaaaaacgcgtt
gagaaagtgtctgactacctaactgaaggtcaagaagttcaagttaaagttcttgaaatt
gatcgtcaaggccgtgtacgtctaagtatgaaagaagcagtagagaagccagcagaagaa
gcaaacgacgcttctgaagcaaaaggcgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (10)   
   Pfam (10)   
All databases (22)   

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