KEGG   Vibrio natriegens: PN96_02580
Entry
PN96_02580        CDS       T04636                                 
Name
(GenBank) Fis family transcriptional regulator
  KO
K10941  sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
vna  Vibrio natriegens
Pathway
vna02020  Two-component system
vna02040  Flagellar assembly
vna05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vna00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    PN96_02580
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    PN96_02580
  09142 Cell motility
   02040 Flagellar assembly
    PN96_02580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vna03000]
    PN96_02580
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:vna02035]
    PN96_02580
Transcription factors [BR:vna03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    PN96_02580
Bacterial motility proteins [BR:vna02035]
 Flagellar system
  Flagellar assembly proteins
   Others
    PN96_02580
SSDB
Motif
Pfam: Sigma54_activat FleQ Sigma54_activ_2 HTH_8 AAA_5 AAA_16 HTH_50 Mg_chelatase bpMoxR AAA_7 AAA nSTAND3
Other DBs
NCBI-ProteinID: ALR14919
Position
1:547348..548814
AA seq 488 aa
MQGLAKLLVIDDDASSRLNLSNILEFVGESCEAVSSDQLGDVDWSELWSGCIIGNISSAS
AATTVMAHLSDAYHIPLLVMERLSLPVDDLPSYVGELELPLNYPQLSNALRHCKDFLGRK
GVNVIASERKNTLFRSLVGQSRGIQEVRHLIEQVAKTEANVLILGESGTGKEVVARNIHY
HSTYSSGPFVPINCGAIPPELLESELFGHEKGAFTGALTSRKGRFELADGGTLFLDEIGD
MPMPMQVKLLRVLQERCFERVGGNNTIKVNVRIVAATHRNLESMIEEDTFREDLFYRLNV
FPIEMPALKERKRDIPLLLQELMARLEAEGGQPICFTSRAINSLMEHDWPGNVRELANLI
ERMVILYPNSLIDVNHLPTKYRYSDIPEFQPEGNPFVSVEEQERDVFQDIFSGDFSFDEL
NELESNANAPQELPPEGVNLKELLADLEINMISQALEAQGGVVARAADMLGMRRTTLVEK
MRKYNLQR
NT seq 1467 nt   +upstreamnt  +downstreamnt
atgcaaggtttggcaaaactgcttgtaattgatgacgatgcttcaagtcgtttaaattta
agcaatatattggaatttgttggagaaagttgcgaagcggtcagttctgatcagctaggt
gatgttgattggtctgaactctggtctggttgcattatcggcaatatttcttcagcttca
gcagcgacaacagtcatggcgcatcttagcgatgcttaccacattccattgctcgtaatg
gagcgcttatcgctacctgttgatgacttgccaagttacgttggtgagttggaactgcct
ttaaactaccctcaacttagtaacgccttgcgtcattgcaaagacttcctgggtcgaaaa
ggtgtgaacgtgatcgcaagtgagcgcaaaaatacacttttccgcagtttagtgggtcag
agtcgtggcattcaggaagttcgtcaccttattgagcaagtcgccaaaaccgaagctaac
gttttaatccttggtgagtcgggcacgggtaaagaagtggttgcgcgtaatatccactac
cattccacgtactctagtggaccatttgtgccaattaactgtggtgcgattcctcctgag
cttttagagagtgagctgtttggtcatgaaaaaggtgcttttaccggggcgttaacctcg
cgtaaaggtcgttttgaattggctgatggcggaaccttattcctcgatgaaattggtgat
atgccaatgccaatgcaggtgaagctacttcgtgtgcttcaagagcgttgctttgagcga
gtgggtggtaacaatacgattaaagtgaacgttcgcattgtagctgcgacgcatcgcaac
ctcgagagcatgatcgaagaagataccttccgagaagacttgttctatcgcctcaacgta
tttccaattgaaatgcctgcgctgaaagaacgtaagcgtgatatccctctgttgttgcaa
gaattgatggctcgtctggaagccgaaggtggacaacctatctgctttacttcgcgcgcg
attaactctttgatggaacacgactggccggggaacgtgcgtgagctggcaaacctgatc
gagcgcatggtgattctttacccgaacagcctgatcgatgtgaatcacttgccgacgaaa
taccgttacagtgatatcccggaattccagcctgaagggaatccgtttgtctcagtcgaa
gagcaagagcgtgatgtctttcaggacatcttctccggagatttcagttttgatgaactc
aatgagttagagagcaacgcaaatgcaccgcaggaacttcctcctgaaggcgtaaaccta
aaagagctattggcagatctggaaatcaacatgatcagccaagcacttgaagcccaaggt
ggtgttgtcgcacgagcagccgatatgctgggaatgcgccgcacgactttggttgagaaa
atgcgtaagtacaacttgcaacgctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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