KEGG   Virgibacillus necropolis: CFK40_04265
Entry
CFK40_04265       CDS       T04976                                 
Name
(GenBank) ATP-dependent helicase
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
vne  Virgibacillus necropolis
Pathway
vne03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vne00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CFK40_04265
  09124 Replication and repair
   03420 Nucleotide excision repair
    CFK40_04265
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vne03021]
    CFK40_04265
   03400 DNA repair and recombination proteins [BR:vne03400]
    CFK40_04265
Enzymes [BR:vne01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     CFK40_04265
Transcription machinery [BR:vne03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CFK40_04265
DNA repair and recombination proteins [BR:vne03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CFK40_04265
SSDB
Motif
Pfam: Helicase_C_2 DEAD_2 DEAD ResIII PhoH AAA_22
Other DBs
NCBI-ProteinID: ASN04277
UniProt: A0A221M9G2
Position
complement(896273..898552)
AA seq 759 aa
MTNIVKISVRHLVEYVFRSGSIESGGFRTSTPLTDGTKAHQKIQKTYTSSDQKEVYLKTV
IPYETITMHVDGRADGLLFQEDGLVIVDEIKSTSRALVTITEETYPVHWAQAVFYAYIYA
KDRELAQMTIQLTYVHVRTEEQKQFQRIMTLPELESFIMEVVSQYAAYAKAKTQHIVDRN
SSSKELVFPFEVYREGQHKLAGSVYKTILDKKVLFAKASTGIGKTISTIFPAIKSIGEGN
LQRIFYLTAKTITRTAAEDAFRLLIANGLDMKVVTITAKDKICFQEETICTAEHCPFADG
YYDRINGAILDIFENESLMSRAVIEAYARKHRVCPFEFSLDLAYTADAVICDYNYIFDPR
VSLKRLIEDQKKQSVLLVDEAHNLVERAREMYSAVLLKSSFLQVQKAYKDINAAVAKAAK
AVNVCLAEKRKQENIAEKQLDEDLAVLVEKFTEVAEEELVQNVESNQLLLDTYFAASAFA
KICRLYDKRFVSYVEVNKSEVMIKLFCLDPSYLLQQMGKGFRSKVFFSATLAPADYYKNL
LGGTEDDYVLSIPSPFVHENAEVLVQPLSTRYRDRERTLLPMVQFIRDVLNKQKGNFMIF
FPSYDYMNKAFEAFKTEAPDVKTIVQETGMSEELRENFLTAFEPSGDERLVGFAVLGGVF
SEGVDLKGDRLCGVMVVGVGLPQIGFERDIIKDYFTNEGYSGFDYAYVYPGMNKVLQAGG
RLIRSEADHGTIVLIDDRFLQPKYQKLFPEEWRHYKVVN
NT seq 2280 nt   +upstreamnt  +downstreamnt
atgacaaacattgttaaaatatcggtacggcatctggtggaatatgtatttcggagtggg
agtattgagtccggcggcttccgcacttcaactcctcttacagatggtacgaaggctcat
cagaagatacagaaaacctacactagtagtgatcagaaggaagtctatcttaaaacagtg
attccctatgaaactattaccatgcatgtggacggacgcgctgacggattactttttcaa
gaggacgggctggtaatcgtcgatgaaatcaagtctacttcacgcgcgctcgttactatt
acggaggagacttacccagtacactgggcacaagctgtcttctatgcgtatatttatgcg
aaagatcgagagcttgcgcaaatgaccattcaactgacatatgtacacgtcagaacagaa
gagcagaaacagtttcaacgaattatgaccctgccagagcttgaaagcttcataatggaa
gtagtcagtcagtacgctgcatatgccaaagcgaagactcagcatattgtggacagaaat
tccagcagtaaagagctggtatttccttttgaagtctaccgggaaggtcagcacaagctt
gcgggttcagtctataaaacgatactcgataaaaaagttttgtttgccaaagcttccact
gggatcggtaaaacaatttccacgattttccctgcaattaaatcgattggtgaaggcaac
ctacagcgcattttttacctaacagcaaaaaccattaccagaacagcagccgaagacgcg
ttccgattgttgattgcaaatggcttggacatgaaggttgtcaccattacagcaaaggat
aagatctgttttcaggaggaaactatttgtaccgctgagcattgtccttttgctgacggt
tattatgaccggattaacggggcaattctggatatttttgaaaatgaatcactaatgagc
cgtgcagtgattgaagcttatgcccggaagcatcgagtttgtccatttgaattttcgctt
gaccttgcttacacagcagatgcggttatttgcgattataattatatattcgaccctaga
gtgtccttaaaacgcttaatcgaggatcagaaaaaacaatccgtactgctcgttgatgag
gcgcacaatctggttgaacgtgctcgggaaatgtactcagcggtattgttaaaatcatct
tttttacaggtgcaaaaagcatacaaagatataaacgcggctgttgctaaagccgcgaag
gccgtcaatgtttgtctcgcagaaaagcgaaagcaggagaatattgcagaaaaacaactc
gatgaagacctggcagttctggtggagaagttcacggaagtggcagaggaagaattggtt
cagaatgtagaatccaatcaactattattggatacctattttgctgccagtgccttcgca
aaaatctgccgcctatatgacaaacgcttcgtctcttatgtagaagtaaacaagagcgag
gtaatgataaagctgttttgtttagatccatcgtaccttctccagcaaatgggaaaaggc
tttcgttctaaagttttcttttcggctacactagcaccagcggattactataaaaacttg
ctcggaggaaccgaggatgactatgtgctatccatcccctctccatttgttcatgaaaat
gcagaggttctggttcagcctttgtccacccgctatcgtgaccgtgaacgcacacttttg
ccaatggtccagtttattcgtgatgttttaaacaaacaaaaagggaatttcatgattttt
ttcccgtcctatgattatatgaataaagctttcgaagcatttaaaacggaagcaccagat
gtaaaaacaattgtccaggaaacagggatgtcggaggagctgcgtgagaatttcctaacc
gccttcgaaccaagcggagatgaaagattagtaggatttgcggttcttggtggtgttttt
tcagaaggggtcgatttaaagggcgaccggctttgcggagttatggtcgttggggtcggg
ctaccgcagatcggattcgaacgagatattatcaaggattattttactaatgaaggatat
agtggctttgattacgcctatgtctatcctggaatgaataaggtactgcaagctggcggc
agacttatcaggtctgaggccgatcatggaaccattgtattaatagatgaccgattttta
cagccaaagtatcagaaactgttcccagaagagtggcgtcattataaggttgttaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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