KEGG   Vibrio nigripulchritudo: VIBNI_A0346
Entry
VIBNI_A0346       CDS       T02871                                 
Name
(GenBank) Putative DNA helicase, UvrD/REP type
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
vni  Vibrio nigripulchritudo
Pathway
vni03420  Nucleotide excision repair
vni03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vni00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    VIBNI_A0346
   03430 Mismatch repair
    VIBNI_A0346
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vni03400]
    VIBNI_A0346
Enzymes [BR:vni01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     VIBNI_A0346
DNA repair and recombination proteins [BR:vni03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     VIBNI_A0346
   MMR (mismatch excision repair)
    Other MMR factors
     VIBNI_A0346
SSDB
Motif
Pfam: UvrD-helicase PDDEXK_1 AAA_19 UvrD_C UvrD_C_2 Cas_Cas4 AAA_30 AAA_11 AAA_22 Dna2 ResIII DEAD
Other DBs
NCBI-ProteinID: CCO56546
UniProt: U4K1W9
Position
1:complement(374000..376870)
AA seq 956 aa
MSLANPSQEIAIHHHEGPLLIIAGPGSGKTYTLVERIMNLIRVHGAKPEQLLVVTFTEKA
AQELKTRIANRLLELGSDFNVNEMYLGTFHSICLRILEEYRDFTRLKRSFVLMDQFDQQY
FLYQNLREFKDIDGIEHICGEHKIPAWAKSENLLGWLNKTSEEVLDIDRLCSSPDEAICA
LGESYRIYQGLLQKHNALDFSCIQLETLVLLKENPHVLSELVAKLEYLMVDEYQDTNTIQ
EQLLKLLMGEKHNLCVVGDDDQALYRFRGASVRNILEFPQQFAPNECQQVKLSVNYRSHP
DIVGFYDTYMGDQAWFSEGVNYRYPKTIAPCDNDFKEGPTVVSAITPEGDDWHNDVYQML
IHLKQNGKLTDWNQVAFLFRSVKSDKVKALAQSLEENGVPVYSPRANLFFEREEVRYLIG
ALHMVFPMVMVERKKKMAEGRRLPIWDYYENYCIKPFMQQLKEPEQTELLEWCKRKAKYH
IGLNKNADSSFLSLLYELLQFPLFSTYLDQENGNERAQRNLAQLSRMLGKFEYLHHVSVL
NPKYLEKNLISLFDNFLKFLYEGGIDEYEDMSEYAPSGCVSFLTIHQSKGLEFPIVFVGS
LEGTPHKQYGDLDEIIEHQYMGKPPFEPLEDTKYFDFWRLYYTAFSRPQNLLVLTGQEKN
GHGKTPSRYFTDYTSKLPHWRSVKHHLTEIEFEQVKDVNIKNEYAFTSHITLFETCAEQY
RLFKDLEFQPVKASPMLFGTLIHETLEDVHKVAIRGEVEKLTKENIENWLLDNYQNLANR
ERMYLGESTLGAALKHVMRYVNRKGSDWSDIKETEVDISLVKDSYVLTGSVDLIKGEGDT
VEIVDFKSERKPNMEKDRDRIKHHQRQLEVYAHLVEQNTGHKVSRMHLYFTGETNGLPTI
SFNKNTSAIEHTIEDFDRIVGKIESKDYSLKARPDKTCVDCSARAYCDRKNWKFCG
NT seq 2871 nt   +upstreamnt  +downstreamnt
atgtcactggcgaacccatctcaagaaatagcaatacaccatcacgaaggacctcttctg
atcattgcaggtcctggctcaggtaaaacctatactctggttgaacgaattatgaatctt
attcgagttcatggtgcgaaaccagagcagctattagttgtaacattcactgaaaaagca
gctcaggaactaaaaacacgaatagctaaccgtctattggagctcggctctgattttaac
gtgaatgaaatgtacctcggtacgtttcactctatttgcttaagaatcctcgaagagtac
cgcgatttcactcggttgaagcgcagttttgttctgatggaccaattcgatcagcagtat
tttctttatcaaaatctccgtgaatttaaagatattgacggaattgaacatatctgcgga
gaacataagatccctgcgtgggcaaaatcagaaaatttgctcggatggctgaacaagact
tctgaagaagttctggatattgataggctttgtagttctccagacgaggcaatatgcgca
ttaggtgaaagctatcgtatttatcaaggtttgctacaaaaacacaacgcactcgacttt
tcatgtatccagcttgaaaccttagtactactgaaagagaaccctcatgttctatctgaa
ctagtggcaaagttagaatacttgatggtcgatgaataccaggataccaatacgattcag
gagcaactcctcaagcttctcatgggcgaaaaacataacttgtgtgtcgttggcgatgat
gaccaagctctttatcgttttcgaggggctagtgtgcgtaatattctcgagtttccgcaa
caattcgcaccaaatgaatgtcagcaggtaaaactctctgtaaactatcgttcccatcct
gacattgttggcttttatgacacttatatgggagatcaagcgtggttttctgaaggtgtt
aactaccgatatcccaaaacgatagccccttgtgataatgattttaaagagggtccaacc
gttgttagtgctatcactcctgaaggtgatgattggcataatgatgtgtatcagatgctg
attcacctgaaacaaaatggaaagttaacggattggaatcaagtcgcctttttatttcgt
tcggttaaatcggataaggttaaagctctcgcacaatcattagaagagaatggagttccg
gtatattcaccacgtgcgaacctgttttttgagcgagaagaagtgcgctatctgataggg
gcgcttcatatggtttttcccatggtgatggttgagcgaaagaaaaaaatggccgaaggt
cgtcgtttacctatatgggactactacgaaaattactgtatcaaaccatttatgcagcaa
ctcaaagaaccagagcagactgagttgctcgaatggtgtaaaagaaaggctaaatatcac
attggcctaaataaaaacgccgactcatcttttctctcccttctgtatgagctattgcag
ttccctttattttcaacttatcttgatcaagagaatgggaatgagcgagcgcaacgcaat
ttggcacaacttagccgaatgctcggaaagtttgagtacctacatcatgtcagtgttctt
aaccctaagtatctagagaagaacctcatttctcttttcgataactttctgaaattcttg
tatgaaggcggtatcgatgagtatgaagatatgtctgagtatgccccgtctggttgcgta
tcatttctgactattcaccagtctaaaggccttgaatttccaattgtctttgtcggttca
ttagaaggaacaccgcataagcagtatggtgatctggatgaaataatagagcatcagtac
atgggtaaacctccattcgagccattagaagatacaaaatatttcgacttctggcgtttg
tactacactgctttttctcgtcctcaaaatttattagtgctgaccggccaagagaaaaat
ggtcacggtaagacaccgtctcgatactttaccgactatacaagcaaactaccgcattgg
cggagcgtgaaacatcacttaactgaaatcgaatttgagcaagtgaaagatgtgaacatc
aaaaacgagtacgcctttacgtctcatatcacgctatttgagacgtgtgctgaacagtat
cgattatttaaagatcttgagttccagccggttaaagcaagccctatgttatttggtacc
ttgattcatgaaactctagaagatgtgcacaaagttgccattcgaggggaagttgaaaag
ctgactaaagagaatattgaaaactggcttctagataactatcagaatctggcaaacaga
gagcggatgtatctgggcgaatcgactttaggagcggcgctcaagcatgtaatgcgctat
gtgaaccgtaaaggaagtgattggtctgatatcaaagaaactgaagtggatatttcgttg
gtaaaggatagctatgtgctcactggaagtgtcgatttgatcaaaggtgaaggtgatacc
gttgaaattgtcgatttcaagtcagaacgtaaaccgaatatggaaaaagaccgtgatcgt
attaagcaccatcagcgccaactggaagtgtatgcacatttagtcgagcaaaatacagga
cataaagtaagcagaatgcacctgtactttactggagaaactaatgggttaccgacaatc
agttttaacaaaaacacttctgctattgagcataccatcgaggattttgatagaatcgtc
ggcaagattgaaagcaaggattactcgcttaaggcgcggccggacaaaacatgtgtagac
tgcagcgctagggcgtattgcgaccgaaaaaattggaaattttgtggctaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (23)   

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