KEGG   Variovorax paradoxus B4: VAPA_1c14580
Entry
VAPA_1c14580      CDS       T02835                                 
Name
(GenBank) putative outer membrane porin, OprD family
  KO
K18093  imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
Organism
vpd  Variovorax paradoxus B4
Pathway
vpd01501  beta-Lactam resistance
vpd02020  Two-component system
Module
vpd_M00745  Imipenem resistance, repression of porin OprD
Brite
KEGG Orthology (KO) [BR:vpd00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    VAPA_1c14580
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    VAPA_1c14580
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:vpd02000]
    VAPA_1c14580
   01504 Antimicrobial resistance genes [BR:vpd01504]
    VAPA_1c14580
Transporters [BR:vpd02000]
 Other transporters
  Pores ion channels [TC:1]
   VAPA_1c14580
Antimicrobial resistance genes [BR:vpd01504]
 Gene sets
  beta-Lactam resistance modules
   Imipenem resistance, repression of porin OprD [MD:M00745]
    VAPA_1c14580
SSDB
Motif
Pfam: OprD
Other DBs
NCBI-ProteinID: AGU48570
UniProt: T1X8U5
Position
1:1585242..1586615
AA seq 457 aa
MKSLARRYPAAGRFCSAAFAVLSTAAMAVEGDAQQANAGGFVQDTRWRVLNRSVYESRHY
LDGDRSNGGRNAALPRRQRSDYAQEWGYGLMGSVESGFTRGPVGFGADAHAYFAQNLDGD
DFRVGKIRMLPVDRQGYAQDGIARGGAAFKARVSSTVLKVGEQRTKTPIFSSSDTRLLPE
AMRGWLLTSNEFDRLTLQAGRFTGSTDRNARGTGNPLVVNYLDPKSPRGDAFDFAGVTWK
AAPSLSLTGYFGRLKDTWRTGYLGATYAVQLEAKRALGFDLQLYHSRDTGRALAGPIDNT
TASLVTTYSHGPHRMGVGWQKVDGDTPFDYVTRGAIWLGNAAQLSDFNAPHEQSWQLRYE
VDAASWGAPGLAMGAAYIRGSGIDGSRVPARGGYAWLGYGKDGRHRERDLWLRYTVRAGS
AKGLALLLRYGEHRSNKAQAELDTRQIRVAVEYPIGG
NT seq 1374 nt   +upstreamnt  +downstreamnt
gtgaaatccctcgcacgccgatatccggccgcgggccggttctgcagcgcagccttcgcc
gtgctgagcaccgccgccatggcggtcgaaggcgacgcgcagcaggcgaacgccggcggc
ttcgtccaggacacgcgctggcgcgtgctcaaccgcagcgtctacgaaagccggcactac
ctcgacggcgaccgcagcaacggcggccgcaacgccgcattgccccgcaggcagcgcagc
gactacgcgcaggaatggggctacggcctcatgggctcggtcgagtcgggcttcacgcgc
ggcccggtcgggttcggcgccgatgcgcacgcctactttgcgcagaacctcgacggcgac
gacttccgagtcggcaagatccgcatgctgccggtggaccgccagggctacgcccaggac
ggcatcgcgcgcggcggcgcggcattcaaggcgcgcgtctcttccaccgttctcaaggtg
ggcgagcaacgcaccaagacgccgatcttcagttcctccgacacgcgcctgctgcccgag
gccatgcgcggctggctgctcaccagcaacgagttcgaccggctcacgctgcaggccggc
cgtttcaccggctcgaccgaccgcaatgcacgcggcaccggcaacccgctggtcgtcaac
tacctcgacccgaagtcgccgcgcggcgatgccttcgacttcgccggcgtcacgtggaag
gcggcgccctcgctttcgctcacgggctacttcggacgcctgaaggacacctggcgcacc
ggctacctgggcgccacttacgcggtgcagctcgaagcgaagcgtgcccttggcttcgac
ctgcagctctatcacagcagagacaccggccgggctctcgcgggcccgatcgacaacacc
accgcgagcctcgtgaccacctacagccacggcccccaccgcatgggcgtgggctggcag
aaggtggacggcgacacgccgttcgactacgtgacgcgcggcgccatctggctcggcaat
gccgcgcagctgtccgacttcaatgcgccgcacgagcaatcgtggcagctgcgctacgaa
gtcgatgccgcaagctggggcgcgccgggactcgcgatgggcgccgcctacatccgcggc
agcggcatcgatggcagccgcgtgcccgctcgcggcggctatgcctggctgggctacggc
aaggacggcaggcaccgggagcgcgacctgtggctgcgctacacggtgcgggcgggatcg
gccaaggggctggccttgctgctgcgctatggcgagcaccgcagcaacaaggcgcaggct
gaactcgacacccgccagattcgcgtggctgtggaatatccgatcggcggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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