KEGG   Vigna radiata (mung bean): 106778272
Entry
106778272         CDS       T04126                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
vra  Vigna radiata (mung bean)
Pathway
vra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106778272
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vra03041]
    106778272
Enzymes [BR:vra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     106778272
Spliceosome [BR:vra03041]
 Complex C
  Other components
   Step II factors
    106778272
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 ABC_tran nSTAND3 AAA_16 TsaE Sigma54_activ_2 SLFN-g3_helicase AAA_30 PhoH T2SSE
Other DBs
NCBI-GeneID: 106778272
NCBI-ProteinID: XP_014521700
UniProt: A0A1S3VTR7
Position
Unknown
AA seq 919 aa
MAANDGFDTLQYLSLLSKVCVELESHTGAADKVLAEFIIHLARSSDNLHHFNAVLNDNGA
FYPDYLVRTLFTLVRAVLEPVKTESKAKQEDSGSSSLKPLKRVSSPEKGEAKQFTAAGNL
SSTYKDEEGDGLPRQVDDDDEDFEIELNDDAPAFLQGQTKHSMDMSPLKIFKNPEGSLLR
SAALQSALAKERREVREQQHSSLFDSIPKDLNRAWEDPMPEKGERHLAHELRGVGLSAFD
MPEWKRSSGKSISFGPKSKLSIPEQRQSLPIYRLKNELVQAVHDNQVLVVIGETGSGKTT
QITQYLAEAGYTTQGKIGCTQPRRAAAVSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDT
LIKYMTDGMLLREMLMDETLSRYSVIMLDEAHERTVYTDVLFGLLKLLLKRRPELRLIVT
SATLDAEKFSGYFFNCNIFTIPGRTFHVDILYDTQPESDYLDASLRTVLQIHLNEPEGDI
LLFLTGQEEIDFACQTLVEKMKKLGKNVPELVILPVYSALPSEMQYRIFEPAPPGKRKVV
VATNIAEASLTIDGIYYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGP
GKCYRLYTESAYRNEMSPTTVPEIQRINLATTTLNMKSMGINDLLSFDFMDSPSPQALVS
AMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGN
IFYRPREKQGPADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCSENFVQSRSLRRVQ
DVRKQLLTIMDRYKLDVASAGINFTKVTKAITAGFFFHAARKDPQEGYRTLVENQSVYIH
PSSALFHRQPDWIIYHELVMTTKEYMREVTAIDPKWLVELAPRFFKAADPTKMSKRKRQE
RIQPLHGASEQWRLSKRRA
NT seq 2760 nt   +upstreamnt  +downstreamnt
atggctgcgaacgatggattcgacacgcttcaatacttgtcgcttctctccaaggtctgc
gtcgagttggagtcccacaccggcgccgccgacaaggtcctcgccgagttcatcatccat
ttggctcgttcatccgacaaccttcaccacttcaacgccgtactcaacgacaacggtgcc
ttttatcctgattaccttgtccgaacgcttttcacccttgttcgcgcagttcttgaaccc
gttaagacagagtccaaagccaaacaagaggacagtggcagttcttcgttgaaacctctc
aagagagtctcctctcctgaaaaaggggaagcaaaacagttcactgccgccggaaacttg
agttctacatataaggacgaggagggagatgggttgccacgccaagtagatgatgatgat
gaagatttcgagattgagttgaacgatgatgcacctgcattcttgcaggggcaaaccaaa
cactcaatggacatgtctcctctcaagattttcaagaatccagaaggttctctgctccgc
agcgcggcgcttcagtctgcacttgctaaggaacgaagagaagtgcgagaacagcagcac
agttcactatttgattcaattccaaaagatctcaatcgagcttgggaagaccctatgcca
gagaaaggtgaaagacaccttgctcacgagcttaggggtgttggtttatctgcatttgac
atgccggagtggaagaggagcagcggaaaatccatttcatttgggccaaaatcaaagctt
tctattccagaacagaggcagagtttgccaatttatagattgaaaaatgaattggttcag
gctgtgcatgataatcaggtgttggtggtgatcggagaaactggttctgggaagactact
cagattacccagtatcttgctgaagcggggtacaccacacaggggaaaattggatgtact
caaccacggagggcggctgcagtgtctgttgcaaagcgggttgcagaagagttcggttgt
cgattgggggaggaagttggttatgccattcggtttgaggattgcactggaccggatact
ctcatcaaatacatgacagatggtatgcttcttagggaaatgttaatggatgagactcta
tcacggtattctgttattatgcttgatgaggcccatgaaagaactgtttatactgatgtt
ctttttggactcctgaagctgctcctgaagcgtaggcctgagttaagattgatcgtgacg
tctgctactctggatgccgagaagttttcagggtatttctttaactgtaacatctttaca
atacctggtagaacttttcatgtggacatactttatgatacacagcctgagagtgattat
ttagatgcatctttacgcactgttctgcagatccacttgaatgaacctgaaggagacatt
cttctcttcttaactggtcaagaagagattgattttgcttgccaaactcttgttgagaaa
atgaagaaattaggtaagaatgttccagagctcgtcattttaccggtttatagtgctctt
cctagtgaaatgcagtacaggatatttgaacctgctccacctgggaaaaggaaagtggtt
gtggctactaacattgctgaggcttctttgactattgatgggatatattatgtaattgat
ccaggatttgctaagcagaatgtttataaccctaagcaaggtcttgactctttggtaata
actccaatttcacaagcatcagccaaacaaagagcaggacgtgcagggcgtacgggacct
gggaagtgttatcgtctctacactgaaagtgcatacaggaatgagatgtctcccactaca
gttccggagattcaaaggataaatcttgcaacaactactcttaatatgaaatctatgggg
ataaacgatctattatcctttgattttatggattcgccttcccctcaggcgcttgtttct
gctatggaacagctttacagtcttggagcattggatgaagagggcttgttaaccaaactg
gggaagaaaatggcagaatttcctttggatccaccgttgtccaagatgctacttgccagt
gtggatcttggatgcagtgatgagattttgaccataattgccatgattcaaaccggaaat
attttttacaggccaagggaaaagcaaggcccagcagatcagaagagggcaaagtttttc
cagccagagggtgaccatcttactctacttgctgtttacgaggcttggaaagctaagaac
ttttcaggaccgtggtgttctgagaactttgttcaatctcgttcgttgagaagagtccag
gatgtcaggaaacagctgctcactatcatggataggtacaaattagatgttgcgagtgct
ggaattaacttcaccaaagtgacgaaggctatcacagcaggattctttttccatgctgct
agaaaggaccctcaggaaggttacagaaccctggttgagaaccagtctgtatatatccat
ccaagctcagctttgttccacagacagccagactggatcatctaccacgagcttgtgatg
acaacgaaggaatatatgcgtgaggtcactgccatagaccctaaatggttagttgaattg
gctccaagatttttcaaagctgcagatcccacaaagatgagcaagcgaaagcgtcaagaa
cgtatacaaccacttcatggtgcatcggaacaatggcgtttgagtaaacgccgtgcatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (16)   
   Pfam (16)   
All databases (34)   

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