KEGG   Vitis vinifera (wine grape): 100241190
Entry
100241190         CDS       T01084                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100241190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100241190
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100241190
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     100241190
SSDB
Motif
Pfam: EDC4_C Ge1_WD40 WD40
Other DBs
NCBI-GeneID: 100241190
NCBI-ProteinID: XP_002269564
UniProt: F6GZB1
Position
10:join(3188441..3189121,3198544..3198593,3198667..3198823,3198958..3199176,3202617..3202745,3202921..3204552,3205816..3206175,3206535..3206654,3208025..3208195,3208681..3208845,3208974..3209099,3209422..3209730)
AA seq 1372 aa
MANQAGGPSDLHKLFKPSSNPGPATIIQPSPSSPSPNLQPYATPSPSSSSSSYPPPTGPL
PFHTHYLPYQPQPQPLPISYQTSQQQPHLPSPSPNSGARLMALLTTPSNPPMPFPATAPP
EFSMPTTTPNLVTPQPPPLRLLSNKFPKGRHLIGDRVVYDVDVRLQGEVQPQLEVTPITK
YVSDPGLVVGRQIAVNRTYICYGLKLGNIRVLNINTALRALLRGHTQRVTDMAFFAEDVP
LLASASIDGLVFIWRINEGPNEDDKAHITGKIVIAIQIVGGGASVHPRVCWHSHKQEILV
VAIGNRILKIDSTKVGKGEVFSAEEPLKCPIDKLIDGVQFVGKHDGEVTELSMCQWMTTR
LASASTDGTVKIWEDRKLVPLAVLRPHDGQPVNSVTFLTAPHRPDHIILITAGPLNREVK
LWASASDEGWLLPSDIESWQCTQTLDLRSSAEPRAEDAFFNQVVALPRAGLFLLANAKKN
AMYAVHIEYGPYPAATRLDYIAEFTVTMPILSLTGTSDSLPDGEHVVQVYCVQTHAIQQY
ALDLSQCLPPPLENLELEKTDSSTSCGFNTANSAACDTLELSHGSKHIEMSVGGATPLPS
ILSSSSENGPIASHPVNLASSEVTSLRETATSGMESKSSALPSSISSENIHAASPPLPLS
PRLSGKLSGFRSPSNSFDPSPPLSNHGGDQPILDYSIDRRMDTVRENFADAPPSVENLRK
DEKNIAQNDISMVPNPPIMFKHPTHLITPSEILSASSESSQITQGMNVGEAKIHDMVVNN
DPESIELEVKVVGETGIPGISKNDELECQRESHVIVAEKKEKSFCSQASDLSIQMTRDCC
VETYTIEGARQVSDANVTAAVDLSPNTADEDVQDSTRDVSAKMGESTTPMIVPQSSIPSK
GKKQKGKNSQVSGPSSPSPSPFNSTDSSNEPSSSSSPPSMDAAFSQLFSMQEMLDQLVNM
QKEMQKQMNVMVAVPVTKESRRLEASLGRSMEKVVKANSDALWARFQEENTKHEKLDRDR
MQQLTNLITNCINKDLPSMLEKTIKKEIAAVGPAVARAITPVIEKTISSAISESFQKGLG
DKVVNQLEKLVNSKLESAMARQIQIQFQTSGKQALQDALRSTLEAAVIPAFEIACKTMFD
QVDSTFQKGLIKHTSGVQQQFESTHSTLAVALRDAINSASSITKTLSGELADGQRQILAI
AAAGANSKAVNPLVTQLSNGPLAGLHEMAEAPLDPTKELSRLISERKFEEAFTGALHRSD
VSIVSWLCSLVDLQGILSLVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAINP
ADPMIALHVRPIFEQVYQILGHQRNLPTTSAAEASSIRLLMHVVNSVLLSCK
NT seq 4119 nt   +upstreamnt  +downstreamnt
atggcgaatcaagcgggaggaccctcggatttgcacaagctcttcaaaccctcctccaat
ccgggtcctgctactataatccaaccctcgccttcatccccaagcccaaacctccaaccc
tatgccacgccttcaccttcatcttcatcttcttcttaccctcctcccactgggccttta
ccatttcacacccactacctcccttaccagccccagccccaacccctacccatctcgtat
caaacttcacagcaacaaccccacctcccttcccctagccctaattcgggtgcccgattg
atggctcttcttaccacaccctccaatcctcccatgccctttcctgccacagcccctcct
gaattttccatgcccaccaccactcccaatttggtcacccctcagccccctcccttgcga
ttgctcagcaataaattccccaagggccgccatctcattggcgaccgtgttgtttacgat
gttgatgttagattgcaaggcgaggttcagccccagctggaagtcactcccatcaccaag
tatgtctccgatcctggtcttgtcgtgggtcgtcagattgctgttaacaggacctatata
tgctacggcctcaagcttggaaacataagggttcttaatatcaatactgcattgagagct
ttgcttcgcggccacactcagagggtaacagacatggctttttttgctgaggatgttccc
cttctggccagtgcaagtattgatggcctggttttcatatggaggatcaatgaaggcccg
aacgaggatgataaggcccacattactgggaaaattgttattgccattcaaatagtagga
ggaggggcatcagtgcatccacgagtgtgttggcattctcacaaacaagaaattttggtt
gttgcaattgggaatcgtatcctgaaaattgattccacaaaagtaggaaagggtgaagtg
ttttctgcagaggagcctcttaaatgtcccattgataaactaatagatggggttcagttt
gttggtaaacatgatggtgaagttacagagctgtcaatgtgccaatggatgactacccgt
ttagcttcagcttcaacagatggcacggtgaagatttgggaggaccggaaactggtaccc
cttgcagtactgaggccacatgatggtcaacctgttaattctgttacattcttgacagct
cctcaccgtcctgatcatattattcttatcactgcaggaccactgaatcgggaagtgaag
ttatgggcctcagcaagtgatgaaggatggctgttgcctagtgatattgaatcgtggcag
tgtacgcagactttggatttaaggagttcagctgaacccagggctgaggatgcgttcttt
aatcaagttgtagcattgccacgtgctggtctttttctactggcaaatgcaaagaaaaat
gctatgtatgctgtgcacatagaatatgggccttatcctgctgcaactcgcctggattac
atagctgagtttacagtcactatgccaattttgagtcttactggaacaagtgatagctta
ccagatggagaacatgttgtacaggtctattgtgtccaaacacatgctattcagcaatat
gccttggacttatcacagtgcctgccaccacctctagagaacttggaattggagaaaact
gactccagtacttcttgtggcttcaacactgctaattctgctgcttgtgatactttggaa
ttatctcatggaagtaaacatattgagatgtctgtaggtggtgcaacccccttgccatcg
atactttcaagcagctctgaaaatggtcctatagctagccatcctgtaaacttggcttct
tctgaggtcacaagcttgcgagaaactgctacttcaggtatggagtctaagtcaagtgct
ttaccatcgagtatcagttctgaaaatattcatgctgcatctcctcctcttcctttgagt
ccaagattatctggaaaattatctggttttagaagtccatcaaatagctttgaccccagt
ccaccactcagcaatcatggtggtgaccagccaattcttgattattcaattgacaggaga
atggacactgttagagaaaactttgctgatgcacctccttcagttgagaatttgaggaag
gatgaaaaaaatattgcacaaaatgatatttcaatggttcctaatcctcctataatgttt
aagcatcctactcatctgataactccatcagagatattgtctgcttcatcagagagttct
cagattactcagggtatgaatgtgggagaggcaaaaatccatgatatggtagtcaacaat
gatccagaaagcattgagttagaggttaaagttgtaggtgagacaggaattccaggaatc
agcaaaaatgatgagcttgagtgtcagagagaatcccatgttattgttgcagagaaaaag
gagaaatccttttgctcacaggcctccgatcttagcattcaaatgactagagattgctgt
gtggaaacttataccattgagggggctcggcaggtcagtgatgctaatgttactgcagca
gtagacctatctcccaacactgctgatgaagatgtccaagattcaacaagagatgtgtct
gcaaagatgggtgaatcaactactcccatgatagtgccacaatcctccatcccatccaag
gggaaaaaacagaaaggaaaaaattctcaagtttctggtccatcaagcccctctcctagt
cctttcaactccacagattcatccaatgaaccaagtagcagttcaagtcctccatctatg
gatgctgctttttctcagttattttctatgcaggagatgctggaccagttggtgaacatg
caaaaggagatgcagaagcagatgaatgtgatggtggctgttcctgttaccaaggaaagt
agaagactggaggcatctttgggccgaagtatggagaaggtcgttaaggccaacagcgat
gccctatgggctcgattccaagaagaaaatacaaaacatgagaagttagatcgagaccgt
atgcagcagcttacaaatctgatcaccaattgtataaacaaggacctgccatccatgtta
gagaaaacaataaagaaggaaatagctgcagtaggaccagctgtagctcgtgcaattact
ccagttatagagaaaaccatttcttcagctatttctgaatcattccagaaagggttgggt
gataaggtggtgaatcaactagagaaattagttaactcaaaacttgaatctgcaatggct
aggcaaattcaaatacagtttcaaacttctggcaagcaagctcttcaagatgcattgagg
tctactttggaagctgcagttattccagcatttgagattgcatgcaaaaccatgtttgat
caagttgattctacatttcagaaggggcttatcaaacatacatctggtgttcagcagcag
ttcgagtctacacattcaaccctggctgttgctttgagggatgcaattaattcagcatca
tcaatcacaaaaaccctaagcggagagttggctgatggccaacgccagatcctagctatt
gccgctgcaggtgcaaattcaaaagcagtgaatcccttggttacacagttgagtaatgga
ccattggctggtctgcatgagatggctgaagcacctttggatccgaccaaagaactatcc
agattgatatctgagcgcaaatttgaggaagcattcactggagctctgcacagaagtgat
gtctcaatagtatcatggttatgttctctggttgatttgcaggggattctgtcattggta
cctctacctctaagccaaggagttctgctggccctcctccaacaattggcctgtgacatc
agcaaggaaacacccagaaagcttgcatggatgacagatgtggctgttgccataaaccct
gcagatccaatgatcgcactgcatgtgcggccaatcttcgagcaggtttatcagatactg
ggccatcaacgaaacctacccacaacctctgctgcagaagcatcaagcatccgccttctc
atgcatgtcgtaaactctgttttgctgagctgtaaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (9)   
   RefSeq(nuc) (1)   
   GenBank (4)   
   EMBL (4)   
Protein domain (3)   
   Pfam (3)   
All databases (56)   

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