KEGG   Vitis vinifera (wine grape): 100250427
Entry
100250427         CDS       T01084                                 
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100250427
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vvi03019]
    100250427
   03041 Spliceosome [BR:vvi03041]
    100250427
   03032 DNA replication proteins [BR:vvi03032]
    100250427
Messenger RNA biogenesis [BR:vvi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     100250427
Spliceosome [BR:vvi03041]
 Complex A
  U1 snRNP components
   Sm proteins
    100250427
  U2 snRNP components
    100250427
 Complex B
  U1 snRNP components
    100250427
  U4/U6.U5 tri-snRNP components
    100250427
 Complex C
  U2 snRNP components
    100250427
DNA replication proteins [BR:vvi03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     100250427
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 100250427
NCBI-ProteinID: XP_002282385
UniProt: D7U4T7
Position
3:join(2596976..2597134,2598078..2598130,2598213..2598279,2598363..2598419,2598514..2598576)
AA seq 132 aa
MSRSLGIPVKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARVKGKGSALGVGRGRAVAMRARAQAAGRGA
PPGRGVAPPGRR
NT seq 399 nt   +upstreamnt  +downstreamnt
atgagtagaagcttgggaattccggtgaagctgcttcatgaagctgcagggcatgtggtt
acggtggagctcaagagtggagaactctacagaggaagcatgatcgaatgcgaagacaac
tggaattgccaactcgaaaatatcaccttcactgctaaggatggaaaagtttctcaactt
gagcatgtctttatccgtggtagcaaagtcaggttcatggtcattccagatatgctgaag
aatgctccaatgttcaagcgtcttgatgctagagttaagggcaagggctcagctcttgga
gttggccgtggtcgtgctgttgcgatgcgagcaagagctcaggctgctggccgtggtgca
ccacctggtaggggagttgcacctcctgggcggaggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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