KEGG   Vitis vinifera (wine grape): 100262865
Entry
100262865         CDS       T01084                                 
Name
(RefSeq) protein RRC1 isoform X1
  KO
K12842  U2-associated protein SR140
Organism
vvi  Vitis vinifera (wine grape)
Pathway
vvi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100262865
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vvi03041]
    100262865
Spliceosome [BR:vvi03041]
 Complex A
  U2 snRNP components
   U2 related factors
    100262865
 Complex B
    100262865
SSDB
Motif
Pfam: Surp RRM_1 cwf21 CID RRM_7 CTK3
Other DBs
NCBI-GeneID: 100262865
NCBI-ProteinID: XP_010648761
UniProt: F6H346
Position
4:join(6797534..6797608,6797696..6797831,6798010..6798055,6802324..6802384,6802469..6802621,6802985..6803104,6803211..6803376,6807868..6807980,6808214..6808285,6811773..6811994,6812551..6812609,6812745..6812829,6813003..6813140,6813562..6813786,6813887..6814692,6815082..6815248,6826099..6826349)
AA seq 964 aa
MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTIN
PNERVKTESEGEKSKDGVSVPKKGSRYVPSFIPPPLAAKGKEPDKKKEEEKPKEREKGKS
RNIDHFMEELKHEQEMRERRNQERDQWRDGRHNDSSALPSRFDELPDDFDPSGKLPGSFD
DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN
RADGQAAKDEMQGVVVYEYELKIGWGKSVSLPSQALPAPPPGHMAIRSKEGATVILSGPS
GPPVTSVPNQNSELVLTPNVPDIMVSPPEDDHLHHVIDTMALYVLDGGCAFEQAIMERGR
GNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWMPPPLPTVRSP
EHEKESGTTFAAGRSRRVELERTLTDPQRDEFEDMLRALTLERSQIKEAMGFALDNADAA
GEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESF
NDLYRSVTGRITAEALKERVMKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTPFHSIC
GDAPEIEKKTSSEDTGEGGKSNQDAALAMGKGAAMKELLSLPIAELERRCRHNGLSLVGG
REIMVARLLSLEEAEKQRGYDLDDDLKYAQSHSNSGRYPSSRKEIGVETESVGLSGWNRY
GEDEIQSQGKGSVPLAPTIPIPQPELKAFTNKGKTDPVLPASKWAREDDDSDDEQKRSAR
GLGLSYSSSGSENAGDGPSKADEMEFATESSIPSQPDSGMMNEEHRQKLRRLEVALIEYR
ESLEERGIKSSEEIERKVAIHRKRLQSEYGLSDSNEDVSWNKRSSAERRDRRDDSRETTR
KRHRSRSQSEDGDRERHRDRSHDPESEKGRDRERDREKSGSREREDHDRDRGRERERDRR
RRVK
NT seq 2895 nt   +upstreamnt  +downstreamnt
atgagttccttttccatcacacgaaaaaagacgcctttccagaagcacagagaggaggaa
gaggcaaagaaaaaaagagctgaggatgaaactgctcgattatatgccgaattcgtggag
tcatttcaaggggataatgcgccagggtcaaagacttttgttcgaggggggacaatcaat
cctaatgagagagtgaagacagagtctgaaggtgaaaagtcgaaagatggggtatctgtt
ccaaagaagggaagtaggtatgttccatctttcataccacctcctttggcagccaaggga
aaagaacctgataagaagaaggaggaggagaagccgaaggagagagagaaggggaagtca
cgcaacatagatcattttatggaggagctgaagcatgagcaagagatgagggagagacga
aatcaagaacgggatcaatggcgtgatggacgccataatgatagttctgctctgcctagc
agatttgatgagctgcctgatgactttgatccgagtggaaagcttcctggatcatttgat
gatggtgatccacaaactactaatctctatgttggaaatctctcaccacaggtggatgag
aatttccttttgcgtacttttggaagatttggtcctatcgctagtgtgaaaataatgtgg
cctaggacagaagaggaacggaggcgacaaagaaattgtggctttgttgctttcatgaac
agagctgacggtcaggctgctaaggacgaaatgcaaggggtagttgtttatgagtatgag
ttgaagattggatggggtaagtctgtttctcttccatcacaagcactacctgctccccca
ccaggtcacatggccatcaggagtaaggagggagccacagtaatcttgtctggtccatca
ggtccaccagtcacttctgttccaaatcaaaattctgagctggttctcactccaaatgtc
cctgatataatggtttctcctcctgaggatgatcatctccatcatgtgatcgacacaatg
gctctatacgttctggatggaggatgtgcttttgaacaagccataatggagagaggtcga
ggaaatcctctttttaacttcttgtttgagcttggatcgaaggaacacacttactatgtt
tggaggctctattcatttgctcagggtgatactcttcaaaggtggagaactgagcctttc
atcatgataactggcagtggaagatggatgccaccccctcttcctacggtcagaagccca
gagcatgagaaggagtctggtaccacatttgcagcaggaagaagcaggcgtgtggagctg
gaacggacattgactgatccacagagggatgaatttgaggatatgttgcgtgctttgaca
ttagaaaggagtcagataaaggaagctatgggttttgctttagataatgctgatgcagct
ggagagatagttgaggttctcacagaatctttaacacttaaagaaacacctataccaact
aaagttgcaaggctcatgcttgtctctgatgttcttcacaatagcagtgctccagtaaag
aatgcatctgcataccgtaccaaatttgaagcaaccttacctgacataatggagagcttt
aatgacttgtatcgtagtgtaacgggaaggattactgctgaggcccttaaggaacgagtt
atgaaggttcttcaagtctgggcagactggttcctattttcagatgcatatgtcaatgga
ttgcgggctacttttcttcgatctgggaactctggagtgacaccttttcattctatatgt
ggtgatgcaccagaaatagaaaagaaaactagctcggaagatactggtgaaggaggcaag
tccaatcaagatgctgcgctagcaatgggcaaaggagcagcaatgaaggaactattgagc
cttccaattgctgaattggaaagacgttgcaggcataatgggttatctcttgttggtggt
agagaaataatggttgcaagattgcttagtctagaagaggctgaaaaacaaaggggatat
gatttagatgatgatttgaaatatgcacagagccattcaaactcaggtagatacccaagt
agcaggaaggaaattggtgttgaaacagagtctgttggattatcgggatggaatcgttat
ggtgaagatgagatacagtcacaaggaaaagggtctgtacctttggccccgacaattccc
ataccacagcctgagctcaaagcctttacaaataaagggaaaactgatcctgttttgcct
gcctctaagtgggcccgagaggatgatgacagtgatgatgaacaaaagagaagtgctagg
ggtctggggttaagctactcttcttctggaagcgagaatgcaggtgatggtcctagcaag
gctgatgagatggaatttgcaactgaatcaagcatcccctctcaaccagacagtggaatg
atgaatgaagagcatagacaaaagttgaggcgtctagaggttgctttaatagaataccgt
gagtctcttgaagaacgggggatcaaaagctctgaggaaatcgagagaaaagttgcaatc
catcggaaacggctacagtccgaatatggattatcagatagtaatgaagatgtctcatgg
aataagcggtcatctgcagagagaagggacagacgagatgattctcgcgagactacaaga
aagcgccaccgcagccggagtcaaagtgaggatggggaccgggagaggcaccgtgataga
tctcatgatccagaaagcgaaaagggaagggatcgagaacgtgatcgtgagaagagtgga
agcagagagagggaagatcatgacagggatagaggtagagagagagagagggataggaga
agacgggtgaaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (9)   
   RefSeq(nuc) (3)   
   GenBank (3)   
   EMBL (3)   
Protein domain (6)   
   Pfam (6)   
All databases (50)   

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