KEGG   Xiphophorus couchianus (Monterrey platyfish): 114142822
Entry
114142822         CDS       T05908                                 
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
  KO
K12815  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6]
Organism
xco  Xiphophorus couchianus (Monterrey platyfish)
Pathway
xco03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xco00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    114142822 (dhx38)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xco03041]
    114142822 (dhx38)
Enzymes [BR:xco01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     114142822 (dhx38)
Spliceosome [BR:xco03041]
 Complex C
  Other components
   Step II factors
    114142822 (dhx38)
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 nSTAND3 T2SSE AAA_16 Flavi_DEAD AAA_30 PhoH
Other DBs
NCBI-GeneID: 114142822
NCBI-ProteinID: XP_027870105
Position
4:complement(17488462..17505851)
AA seq 1254 aa
MDDDDVSMHRLEGTQPGAEVGGLIVKKKSAASEPHVFRAPTPRTSLLGLDLLAAQKRKER
EIKEQEESNGNERNRKKSKVSSYKDWEESKSDSGSDDEEDDDTSSATKKERKYRVTGSET
PSNPGGVSEEFRRRHEQREKDRREQGVFASSKEDKTRDKEKSKDKGRERRSERDDRDSRH
SRGNSSSRSERLERSERSERSQRDGWSERISRGSKRDEPATPQNRPRDAFTPSQSNWDED
DSGYGSSRHSQWESPSPAPSHRESDRSERSHRSGRESERRDRSVRGRYTDDTPLPTPSYK
YNEWANDRKHLGSTPRLSQGKGKKNEGGIAFDDEDEKEQWEEDQKQADRDWYMMDEGYDE
FHNPFTSTSEEYVKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRLEVDE
DFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPIVPVKDPTSDMAIISRKGSQLVRKHR
EQKERKKAQHKHWELAGTKLGDIMGIKKKEDEEPGGKVVGEDGKVDYRADQKFAEHMKEK
SEASSDFAKKKSILEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQYLHED
GYTRYGMVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFEDCTSEKTMIKYMTDGI
LLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRTDLKLIVTSATMDSDKF
AAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMVGDILIFMPGQED
IEVTSDQIVERLEDLENAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSL
TVDGIMFVVDSGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRLYTQS
AYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGA
LDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFYRPKGREE
ESDQVREKFSVPESDHLTYLNVYMQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQLKDIM
VQQKMNLMSCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGY
TPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEELSNM
EQEMVLAQEQLRARREEQEKKSNAGSVRAVKICTPGRREEAPMTPRHTPARFGL
NT seq 3765 nt   +upstreamnt  +downstreamnt
atggatgacgatgatgtgtccatgcataggctggaagggactcagccaggtgctgaagtt
ggtggtctgatagtaaagaagaagagcgctgcttcagagccacatgtttttcgggcacct
acaccacgcacctctttgctgggcttggacctgctggctgcgcagaaaaggaaggagcgg
gagattaaagagcaagaagagtctaatggcaatgaaagaaacaggaagaagtcaaaagtt
tcctcctacaaagactgggaggaaagtaaaagtgactctgggtctgatgatgaggaggat
gatgatacaagtagtgccacaaagaaagagaggaagtaccgtgttacaggctctgagact
ccctccaatcctggaggcgtcagcgaagagttcagacgccggcatgagcagcgggaaaaa
gacaggcgtgagcagggagtctttgcctcctccaaggaggacaagaccagagacaaagag
aagagtaaagataaaggaagggagagacggagtgagagagatgatcgagacagtagacat
agtcggggcaacagtagcagccggtcggagcgcttggaacgcagcgagaggagtgagcgc
tcacagcgagatggctggtccgaacgcatcagcagagggagtaagagagacgaacccgcg
acaccacagaatcgcccccgagatgcttttacaccttcccaatctaactgggatgaggac
gatagtggttatggtagctcacggcattcccagtgggagtctccatctcctgccccctct
cacagagagtccgatcgctctgaaagaagccatcgttctggacgagagagtgagaggagg
gacagatcagtcagaggccgatacactgatgacacacccctgcccaccccgtcctacaag
tacaacgagtgggccaatgataggaagcatttaggctccacacctcgtttgtcacaaggg
aaaggcaaaaaaaatgagggaggaatagcttttgatgatgaggacgagaaagaacagtgg
gaggaggaccaaaagcaagctgacagagactggtacatgatggacgaaggctatgatgag
tttcacaaccctttcacctccacctctgaagaatatgtgaaaaagagagagcagatcctc
cagaagcagactcaaaaaagaatatctgctcagaagcgacagatcaatgaggataacgaa
cgctgggagacgaaccgtatgttgaccagtggtgttgtgcaaaggctggaggtggatgaa
gactttgaggaagacaacgctgctaaagttcacctgctggttcacaatctggttcctcct
ttcctggatggaagaatagttttcactaagcagccagagcccatcgtccctgtgaaagat
cccacctctgacatggccatcatctctcgaaagggaagccagcttgtccgtaaacatcgt
gagcaaaaggaacgcaaaaaggcacagcacaaacactgggaattggcaggcaccaagtta
ggtgatataatgggtatcaagaagaaagaggatgaagaacctggaggcaaagtggtggga
gaggatggcaaagtagactacagggctgatcagaaatttgctgagcacatgaaggagaag
agtgaagccagcagtgactttgctaagaagaagagcattctggagcagaggcagtacttg
cctatctttgccgtcaggcagcaacttctcaatattataagggacaacagcatcgtcatt
gttgttggggaaacgggtagcggtaagaccacccagctgactcagtacctgcatgaagac
ggctacactcgctacgggatggtgggttgtactcagccccgacgagtggctgccatgagt
gtggccaaaagagtcagcgaggaaatcggcaccaacctcggagaggaggttggatacgca
atccgctttgaggactgcacttcggagaaaacgatgataaagtacatgactgacgggatt
ctgcttagggagtctctgcgggagtcggacctggaccactacagtgcagttattatggac
gaggctcacgaacgctccctcaacacagatgtgctgtttggcctgctgcgggaggttgta
tctcgacgaactgacctgaagctcattgtgacctctgctactatggactcggacaaattt
gcagcattttttggcaatgtgcctattttccatattccaggaagaacatttccagttgac
atattgttcagcaagaccccacaggaggactatgttgaggctgcagtgaagcaggctctg
cagattcacctcagtgggatggtgggagacatcttgatctttatgcctggacaggaagat
attgaggtaacatcggatcagatcgtggaacgcctggaagacttggagaacgctcctcca
ctggctgtgctgcccatttactcacaacttccttcggatctccaagcgaagatcttccag
aaggctccagatggtgttaggaaatgcattgttgccacaaacattgcagagacgtcgctc
actgtggatgggatcatgttcgttgtggattcaggctattgcaaacttaaggttttcaac
cctcggatcggtatggatgctctccaggtttaccccatcagtcaggctaatgccaaccag
cgctccggccgagccggacgtacaggaccaggccagtgttacaggctttacactcagagt
gcctataagaatgagatgctgaccaccaccatcccagagatccagagaaccaacctggcc
aatgtggtcctgctgttgaagtctctgggggtccaggacttgctcctgttccacttcatg
gatccaccgcctgaggacaacatgctcaactccatgtaccagctctggatcctgggagct
ctggacaacacaggtgctctgaccccaacagggcgtctgatggtggagtttccactcgac
cccgccctctcaaagatgcttattgtgtcttgtgacatgggctgcagtgcagacatcctc
atcatcgtctctatgttgtctgtgccagccatcttttacagacctaagggtcgtgaggaa
gaaagcgaccaggtgagggagaagttctcagtccctgagagcgaccacctcacatacctg
aacgtttacatgcagtggaagaacaacaattattccagcatctggtgcaatgatcacttc
atccacaccaaggccatgcgcaaggtgcgagaggtgcgttcccagttaaaggacatcatg
gttcagcagaagatgaaccttatgtcctgtggctcagactgggacatcatcagaaagtgt
atctgtgctgcttacttccaccaggcagccaagctcaagggcattggtgaatatgtgaac
gtgaggacaggcatgccatgccacctccaccccaccagctccctgtttggtatgggctac
acccccgactacatcatctaccatgagcttgtgatgactacaaaggagtacatgcagtgt
gttactgctgtggacggagagtggctggcggagctgggacccatgttttacagcatcaaa
catgcaggaaagagcagacaggagaaccgtcggcgggccaaagaggagctgagcaacatg
gagcaggagatggtcctggctcaggagcagctgagggcgcgtcgagaggagcaggagaaa
aagagcaacgccggcagtgtgagggcagtgaaaatctgcacaccagggagaagagaggag
gcacccatgacacccagacacaccccggcccgctttggactgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (23)   

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