KEGG T05908: 114155944

Xiphophorus couchianus (Monterrey platyfish): 114155944

Entry

114155944         CDS       T05908

Name

(RefSeq) chromodomain-helicase-DNA-binding protein 4-like isoform X1

K11643

chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]

Organism

xco Xiphophorus couchianus (Monterrey platyfish)

Pathway

xco03082

ATP-dependent chromatin remodeling

Brite

KEGG Orthology (KO) [BR:xco00001]
09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    114155944
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xco03036]
    114155944
Chromosome and associated proteins [BR:xco03036]
Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    114155944
  Chromatin remodeling factors
   NuRD complex
    114155944

SSDB

Motif

Pfam:

SNF2-rel_dom CHDCT2 CHDII_SANT-like Helicase_C CHDNT DUF1087 PHD Chromo ResIII HDA2-3 DEAD PHD_2 AAA_22

Other DBs

NCBI-GeneID:

114155944

NCBI-ProteinID:

XP_027891890

Position

13:22187725..22213412

AA seq 1961 aa
MSGSEDDRDDYGAADDRLMQDDEEEEISENESPKVKKKKKKAKKSRESKGSKRRSRREEL
TISSPEPMDMGGVEDVEDTGSAQRSESEGSDYTPGRKKKKKASSGKEKKRNSVPERSSKR
KEPEPEEDDDDDDDDSEPKSSSQLLDDWGMEDIDHVFTEEDYRSLTNYKAFSQFVRPLIA
AKNPKIAVSKMMMVLGAKWREFSTNNPLRGAAAANAALATANIPAAVETMVAEVTPAAEP
PAAPAEPLQTPAPPLRKAKTKEGKGPNARKKSKPAPKPQEKKNNNAKTKKVAPLKIKLGG
FNSKRKRSSSEEDEPDVDSDFENGSINSVSISEGSNSRSSRSKKKLSKNKPKRKKETEDG
DGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGTWSCPHCEKEGIQWE
AREDASEGEEDNGETGEMEEDDHHMEFCRVCKDGGELLCCDSCPSSYHIHCLNPPLPEIP
NGEWICPRCTCPPLKGKVQKILTWRWGDPPPPTPVPRPPDLPAETPDPAPLAGRSEREFF
AKWSNMSYWHCSWVTELQLEMHCQVMFRNYQRKNDMDEPPPIDFGEGEEDKCLKRKHKDP
MYTHLEEKYLRYGIKFEWLMIHRILNHSVDRKNNVHYLIKWRDLAYDQATWESEDMDVPE
FDTYKVQYWNHRELMMGDDGRPGKKIKVKGRVKRPERPPENPVIDPTIKFERQPDYLDTT
GGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSA
PLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFSFEDNAIRGGKKASRMKKDSS
IKFHVLLTSYELITIDMAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQHKLLLTG
TPLQNNLEELFHLLNFLTPERFNNLEVFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADV
FKHMPSKTELIVRVELSPMQKKYYKFILTKNFEALNTKGGGNQVSLLNVVMDLKKCCNHP
YLFPAAAMEAPKMPNGMYDGSALTKSSGKLLLLQKMMRKLKEGGHRVLIFSQMTKMLDLL
EDFLENEGYKYERIDGGITGGMRQEAIDRFNAPGAQQFAFLLSTRAGGLGINLATADTVI
IYDSDWNPHNDIQAFSRAHRIGQNRKVMIYRFVTKASVEERITQVAKKKMMLTHLVVRPG
LGSKTGSMSKQELDDILKFGTEELFKDDLEGENKEEDSSIIHYDDKAIDRLLDRNQDATD
DTEIQSMNEYLSSFKVAQYVVKDEEEEEEEVQREIIKQEESVDPDYWEKLLRHHYEQQQE
DLARNLGKGKRIRKQVNYNDGSQEDRADWQDDQSDGQSDYSVASEEGDEDFDERSEANSR
RPNRKGLRNDKDKPLPPLLARVGGNIEVLGFNSRQRKAFLNAVMRYGMPPQDAFTTQWLV
RDLRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLIRKK
VQEFEHVNGQWSMPWMADLEENKRAAAQPDSPGKTPSTGTPADTQPNTPAPADDSVKNEE
ASKDGEKDAKKEGEADKNGKEPAKANSEVIAIPDDDEKVPMETQEKKNGEEPMETDKPSN
GEAERAKEKEGEEGEGEKKSSEGGEEDKPAVDEKTEPSEVKPEEPEVKGEEKKEEKTEKM
DTIPPAEEKKDVKEEKEAPKPEEAAKLQNGDGSKEAVATAAVAAAASTASGVSEEKKKAK
TRFMFNIADGGFTELHSLWQNEERAATVTKKTNEIWHRRHDYWLLAGIIQHGYARWQDIQ
NDARFAILNEPFKGEMNRGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSH
PSMALNTRFSEVECLAESHQHLSKESMSGNKPANAVLHKVLKQLEELLSDMKADVTRLPA
TIARIPPVAVRLQMSERNILSRLASRGPETQTQTQQQMPQQ

NT seq 5886 nt +upstreamnt +downstreamnt
atgtctggaagtgaagatgacagagacgattatggagccgccgacgaccgcttaatgcaa
gatgatgaggaagaggagatctcggagaatgagtctccgaaggtgaagaagaagaagaaa
aaggccaagaagagccgggagagcaagggcagcaaaaggcggtcgcgcagagaggagttg
acgatcagctccccagagcccatggacatgggtggagtggaagacgtagaggatacgggc
tcggcccagcgctccgagagcgagggcagcgactacactccaggacgcaagaagaagaag
aaagccagcagtggcaaagagaagaagaggaacagtgttcctgaaaggagttccaaaagg
aaagaaccagagccagaggaggatgacgacgatgacgatgacgactcggagccaaagtca
tcatctcagctgctggatgactggggaatggaggacattgaccatgtgttcaccgaggag
gattacagatccctgactaactacaaggccttcagccagtttgtcaggccgctcattgca
gccaagaatcccaagatcgccgtgtccaagatgatgatggttttgggggcaaagtggcgg
gagttcagcacaaacaaccctctgagaggagcagcagctgcgaatgctgcactggctact
gctaacataccagctgctgtagagaccatggtggcagaggtcacacctgcagccgagccc
ccggcggccccggccgagcctctgcagacgccggcgccgcctctccgcaaagccaaaacc
aaggagggcaaaggtcccaacgcccgcaaaaaatccaaaccagcaccaaagccacaagag
aagaagaataacaatgccaagacgaagaaggtcgctcctttgaaaatcaagctgggaggc
ttcaacagcaaaaggaagcgctcctcgagtgaggaggacgagcctgacgtcgacagcgac
tttgagaatggcagcatcaacagcgtctccatctcggagggttcaaacagccgcagcagc
cgcagcaagaagaagctctccaagaacaaacccaagaggaagaaggaaacggaagatggc
gatggatatgagacggaccatcaggactactgcgaggtttgccagcagggaggggagatc
atcctgtgtgatacttgccccagagcgtaccacatggtgtgtctggaccccgacatggag
aaggccccggagggcacctggagctgcccgcactgcgagaaggagggcatccagtgggaa
gccagagaggacgcctcagagggagaggaggacaacggcgagacgggcgagatggaggag
gacgaccatcacatggagttctgccgggtttgcaaagacggaggcgagctcctctgctgc
gactcgtgtccgtcgtcgtaccacatccactgcctgaaccctccgctgcccgagattccc
aatggggagtggatctgcccccggtgcacatgtccgcccttgaaggggaaggttcagaag
atcctaacatggcggtggggagacccgcctcctcctacgcccgtgccacgccctccagat
ctccccgccgaaaccccagaccctgcccctctggccgggcggtccgagcgggagttcttc
gccaaatggtccaacatgtcttactggcattgctcttgggtcacggagctccagctggag
atgcactgccaggtgatgttcaggaactaccagaggaaaaacgacatggacgagccgccg
cccatcgactttggcgaaggagaggaggacaagtgcctgaagaggaagcacaaggatccc
atgtacactcacctggaggagaaataccttcgctatgggatcaagtttgagtggctgatg
atccaccgcatcctgaaccacagcgtggacaggaagaacaacgtccactacctgatcaaa
tggcgcgacctggcgtacgaccaggccacctgggagtccgaggacatggacgtacccgag
tttgacacctataaggttcagtactggaaccacagagaactgatgatgggagacgatggg
agaccagggaagaagatcaaggtgaaaggaagagtgaagcggccagagagaccccccgag
aacccggtgatagatccgaccataaagtttgagcggcagccggattacctggacaccact
ggtgggacgctgcacccttaccagctggagggtctcaactggctgcggttctcctgggct
cagggcacagacaccatcctggctgacgagatgggtctgggcaagacggtccaaaccgca
gtcttcctctactcgctctataaggagggtcactccaaggggccgttcctggtcagcgct
cctctctccaccatcataaactgggagagagagtttgagatgtgggcgcctgacatgtat
gttgtgacgtacgtcggagacaaagacagcagagccgtcatcagggagaatgagttctcc
ttcgaggacaatgccatccgcggagggaagaaggcgtcgaggatgaagaaagattcatca
atcaaattccatgtcctgctgacttcctatgagttgatcaccatcgacatggccatcttg
ggctccatagactgggcctgcctggtggtagacgaggcccacagactgaaaaacaatcag
tccaagtttttccgggtcttgaacaactatccgctgcaacacaagctgctactgacggga
actccactgcagaacaacctggaggagcttttccacctccttaacttcctcacacccgag
aggttcaacaacctggaagtctttctggaagagtttgccgacattgctaaggaggatcag
atcaagaagcttcacgacatgctgggtccgcacatgctcaggaggttgaaggccgatgtc
ttcaagcacatgccctccaagaccgagctcatcgtccgggtggagctcagtcccatgcag
aaaaaatactacaaatttatcttgacaaaaaactttgaggccctcaacacaaaaggtgga
ggaaatcaggtttctctgctgaacgtcgtcatggacctgaaaaagtgctgcaaccacccc
tacctctttcctgcagcagctatggaagcgccaaagatgcccaatgggatgtacgacggg
agtgctctcacaaagtcatctggaaaactgctgctgctgcagaagatgatgaggaagctg
aaggaaggaggacacagagtcctcattttctcgcagatgaccaagatgttggatctgttg
gaggacttcttggaaaatgaagggtacaaatatgagcggattgacggaggaatcaccggc
ggaatgagacaggaagccatcgatcgttttaacgctcccggtgctcagcagtttgccttc
ttgttgtccacgagggccggaggtctgggaatcaatctggccacagccgacacggtcatc
atttacgactcggactggaatcctcacaatgacatccaggctttcagcagagctcatcgt
atcggtcagaacagaaaggtcatgatctacagatttgtcactaaggcctctgtggaggag
agaattactcaggtggccaagaagaagatgatgttgactcacctggtggtccgacccggt
cttggatccaagacgggctccatgtctaaacaggagctggacgacattctcaagtttgga
acagaagagctgttcaaggacgacttagaaggtgagaacaaagaggaagacagcagcatc
atccattacgatgacaaagccatcgatcgacttctcgaccgcaatcaggacgccaccgac
gacacggagatacagagcatgaatgaatacctgagctccttcaaagtggctcagtatgtg
gtcaaagacgaagaggaagaggaggaggaagtgcagcgagaaatcatcaagcaggaggag
agcgtcgacccagactactgggagaaactgctgcggcaccactatgagcagcagcaggag
gatctggcccgcaacctgggcaaaggcaaacgcatccgcaagcaggtcaactacaacgac
ggctcacaggaagacagagctgattggcaggacgaccagtctgatggacagtcggattac
tctgtggcgtctgaggaaggggatgaagactttgatgagagatcagaggccaactctcgc
aggcccaacaggaaaggcctgaggaatgataaagacaaaccactgccccccctgctggcc
agggttggaggcaacattgaggtgttgggtttcaattctcggcagaggaaggccttcctg
aacgcagtgatgcgttatgggatgcctccgcaggacgccttcaccacccagtggctggtc
cgagacctacgggggaaatctgagaaagaattcaaggcttacgtctctctgttcatgcgc
cacctgtgcgaacccggagcagacggagctgagactttcgcagatggcgtccctagggaa
gggttgtcccggcaacatgtcctcacacgcattggcgtcatgtcgcttatacgcaaaaaa
gtccaggagtttgagcatgtcaacggtcagtggtccatgccctggatggccgacctggag
gagaacaagagggctgcggctcagccggactctccagggaaaacaccgtccactgggacc
cccgctgacacacagcccaacactcctgctccagctgatgactcagtgaagaacgaagag
gcatcaaaggatggagagaaagatgcaaagaaagagggcgaggcagataaaaacggcaaa
gagccagctaaagccaacagcgaggttatcgccatcccggacgacgatgagaaggtccca
atggagacgcaggagaagaaaaacggcgaggagccgatggagacggacaaaccgagcaac
ggagaagcagagagagcaaaggaaaaggaaggagaggagggagagggagagaaaaagagc
tcagagggaggagaggaagacaaaccagctgtagatgaaaagacggagccgtcagaagtc
aaacctgaggaacctgaagtcaaaggagaggaaaagaaggaagagaagactgaaaagatg
gacaccattcctcctgcagaagaaaagaaagatgtgaaggaggagaaagaagctccaaag
ccagaggaggcggccaagctgcagaacggagacggcagcaaagaggctgtggctacggcg
gcagtggcagcggcagcttccaccgccagcggcgtgagcgaggagaagaagaaagccaaa
accagattcatgttcaacatcgcagatggaggattcacagagctccactctttatggcag
aatgaggagcgcgccgccacggttaccaagaaaaccaatgagatctggcaccgtcgccat
gactactggctgctggccggcatcattcaacacggctacgctcgctggcaggacatccag
aacgacgcgaggttcgccatcctcaacgagccgttcaaaggggagatgaacaggggcaac
ttcctggaaatcaagaacaagttcctggcccgaaggtttaagctgttggaacaggcgctg
gtgatcgaggagcagctgcgtcgcgccgcctacctcaacatgtcagaagatccctcccac
ccctccatggccctgaacacccgcttcagcgaggtggagtgtctggccgagtcccaccag
cacctaagcaaggagtccatgtccgggaacaaaccggccaacgccgtcctgcacaaagtg
ctaaagcagttggaagaactgctgagtgacatgaaggcggatgtgacccgcctcccagca
accatcgcccggataccgccggttgctgtccgactccagatgtctgagaggaacatcctg
agccgcctagcgagccgaggaccagaaacacagacgcagacgcagcagcagatgccgcag
cagtag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (13)   
   Pfam (13)   
All databases (24)   

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