KEGG   Xanthomonas citri subsp. citri A306: J151_02587
Entry
J151_02587        CDS       T03584                                 
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xct  Xanthomonas citri subsp. citri A306
Pathway
xct03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xct00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    J151_02587
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xct03400]
    J151_02587
Enzymes [BR:xct01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     J151_02587
DNA repair and recombination proteins [BR:xct03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     J151_02587
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AJD69009
Position
complement(2814772..2817390)
AA seq 872 aa
MSLSEYRRKRSFDKTREPEPGKTLPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPRGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKEDDAYAGTLEADDLLADVAATPADDV
RRAGAGKTQRKGLTTVPPPAAKKRGTWAKQALALSGARRAEMEDAPFAPQLAKLVQSPPE
GAQWLHEIKWDGYRILATVTNGKVRLWSRNALEWTDKTPEIADAIQSLGLRNAQIDGELI
AGRGTKEDFNLLQATLSGERQVPLALAVFDLLHVDGVDISEAPLRERKQLLQQVLQAAPH
MHLAYSSHVEGDGTEAFRVAGEQHFEGIISKRADRPYRDGRSDDWRKTKQLASQEYAVVG
YTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTQQLEGGGRKPTAHIPT
PDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGNGRSTSS
STQRSAKTRAAKNAATQVAKRAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRAT
KGDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLERVSSVKLTEETG
TNAYYLVIEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAEPQRFIA
TATKRLRNKRIFVDYLRNGRGATAVASYPLRGRPGAPVALPLAWSDLSKLQRADAFTLRD
VPEKLRRRRKDPWADMDRIRQNLARWAEQDED
NT seq 2619 nt   +upstreamnt  +downstreamnt
atgagcctgagcgaataccgccgcaagcgcagcttcgacaagacccgcgagccggagccg
ggcaagaccctgccgccggggcagcgtgcgatcttcgtggtgcagttgcaccacgccagc
cgccgccactacgattttcgcctgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggccaagttacgaccccaaggtcaagcgcatggcagtggaggtggaagaccacccg
gtcgattacgccagcttcgagggcgagattcccaggggcgaatacggcggcgggcacgtg
gcgcagttcgatcatggcgtgtgggccaccgcaggcgaccccgaagcgcagttggccaag
gggcatctgcgcttcgagttgttcggcaacaagctcaagggcggctggcatctggtgcgc
tcgggcaagccggcgcggcagccgcagtggctgctgttcaaagaggacgatgcctacgct
ggcacgctggaggccgacgacctactggccgacgtcgctgccacacctgccgacgatgta
cgccgcgcgggcgccggcaagacccagcgcaaggggctgacgaccgtaccgccgccagcg
gcgaaaaaacgtggcacctgggcgaaacaggcgctggcgctgagcggcgcacgtcgcgcc
gagatggaagatgccccgtttgcgccgcagctggccaagctggtgcagtccccgcccgaa
ggcgcgcagtggctgcatgaaatcaaatgggacggttatcgcatcctggccacggtgacc
aatggcaaggtgcggctgtggtcgcgcaatgcattggagtggaccgacaagacaccggaa
attgccgatgccatccagtcgctgggcctgcgcaatgcgcagatcgatggcgaattgatc
gccggacgcggcaccaaggaagacttcaacctgctgcaggccaccttgtccggcgaacgc
caggtgccgctggcgctggcggtattcgacctgctgcatgtggacggggtggacattagt
gaggcaccgttgcgcgagcgcaagcagctgttgcagcaggtgctgcaggctgcaccccac
atgcatctggcctatagctcgcatgtcgagggcgacggcaccgaggcgttccgggtggcc
ggcgaacagcacttcgaaggcatcatttccaaacgcgcagatcgcccgtatcgcgatggg
cgcagcgacgattggcgcaagaccaagcaactggccagccaggaatatgcggtggtcggc
tacaccgcgcccaagggcagccgcagtggttttggctcgctgttgctggccacgccggac
ccggtgcacggctggttatacgtgggccgtgtgggctcaggtttctccgatgccttgatg
cgcgaggtcacccagcaactggaaggcggtgggcgcaaacccaccgcgcatattcccacc
ccagacaccgacctgcgcggcgccacctggtttgcgccgcgctttgtggtggaggtgttc
tatcgcggcatcggtgggcaacagttattgcgccaggcatcgttcaaggcgctgcgtccg
gataaacgcattgccgatctggccgacagcgatgccggaaatggccggtctacttcgtcg
tctacccagcgttcggcaaaaacacgtgctgccaaaaacgcggcaacccaggtagcgaaa
cgtgcagcgacgcgggcaacagcgcctgcgcgcaaatctgcggttgccacaccttcctcg
gctgcgctgccgacgctgtccagcccgaccaagctgatctacccggatatccgcgcgacc
aagggcgatgtctgggactactaccaggcggtgatggatcacctgttgccgcagatcgtg
ggacgcccgctgtccatcattcgctgccccagcggcgccgaaaaaccgtgtttcttccag
aagcaccacaccgccggcctcgagcgtgtgagctcggtcaaactgaccgaagagaccggc
accaatgcgtattacctggtgatcgaagacgcacccggcctgctggagctggtgcaattc
aatgcgctggaattccatccctggggctcgcatgccgaccgcccggatgtggccgaccgg
gtggtcttcgatctcgacccgggcccggacgtgccgttcgccgaggtcaaacgtgcggcc
aacgatattcgtaagctgctggcgcaattggagctggagtcgttcctgcgtgtgtctggc
ggcaaggggctgcacgtggtggtgcccctgaatcccggctgcgactgggaggtgaccaag
cgtttcgccaagggattcgccgatgccctggcgcaggccgagccgcagcggttcatcgcc
actgccaccaagcggctgcgcaacaagcgcatcttcgtggactacctgcgcaacggccgt
ggcgccacggcggtcgcgtcctatccgttacgcggccgcccgggggcgccagtcgcgctg
ccgctggcgtggtcggacctgtccaagctgcagcgcgccgatgcattcaccttgcgcgat
gtgccggaaaagctgcgccgtcggcgcaaggacccctgggcagacatggaccgcattcgg
cagaacctggcgcgctgggcggagcaggacgaggactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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