KEGG   Xenopus laevis (African clawed frog): 100158290
Entry
100158290         CDS       T01010                                 
Symbol
snrnp200.L
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100158290 (snrnp200.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xla03041]
    100158290 (snrnp200.L)
Enzymes [BR:xla01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100158290 (snrnp200.L)
Spliceosome [BR:xla03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100158290 (snrnp200.L)
 Complex C
   U5 SnRNP specific factors
    100158290 (snrnp200.L)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 PhoH SWI2_SNF2 Sigma54_activ_2
Other DBs
NCBI-GeneID: 100158290
NCBI-ProteinID: XP_041442914
Xenbase: XB-GENE-981979
UniProt: A0A8J1MMC2
Position
3L:complement(132718241..132761203)
AA seq 2135 aa
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQKTK
PQMQEERRLKRRKRDEDRHDMNKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKLRDKDRRREVDQLLGQTDDTRYHVLVNLGKKIS
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDAYGEVRDEASDDDMDGDEAVVRCTL
SANLASSGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTAGDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMSKMESDTELSKYL
YQLQETEKEDLIREARGHRDKIRQLNVDMDLESMETEQGEAFTPRQVLDLEDLVFAQGSH
FMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFASDEQLVPVEKLPKYAQSGFEGFKTL
NRIQSKLFKAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINVDGTINVDNFKIIYI
APMRSLVQEMVGSFSKRLSTYGITVAELTGDHQLCKEEINATQIIVCTPEKWDIITRKGG
ERTYTQLVRLIILDEVHLLHDDRGPVLESLVARAIRNIEMTQEDVRLIGLSATLPNYEDV
ATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTSRAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMSRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQVVGRLPDML
NAEVVLGNVQTAKDAVNWLGYTYLYIRMLRSPNLYGISHDDLKIDPLLEHRRLDLIHTAA
LLLDKNNLVKYDKKTGNFQVTELGRIASHFYITNDSVQTYNQLLKPTLSEIELFRVFSLS
SEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLDLSVHLQPITRSTLKVE
LTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLY
QDKFPFFNPIQTQVFNTIYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITP
MEALAEQVFMDWFEKFQDRLYKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGANGPVLEVICSRMRYISSQIERPIRVVALSSSLSNAKDVA
HWLGCSATATFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIIKHSPKKPIIV
FVPSRKQTRLTAIDILTTCAADVQRQRFLHCTEKDLAPYLEKLSDGTLKETLLNGVGYLH
EGLSSLERRIVEQLFNTGAVQVIVASRSLCWGLNIAAHLVIIMDTQYYNGKIHAYVDYPI
YDVLQMVGYANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEHTLSDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYESIPIR
HHEDNLLRQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILGKAVR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLRQLPHFSSEHIKRCTDKEVES
VFDIMEMEDEERSELLQLSDSQMADVARFCNRYPNIELSYEVAERDSIRSGGAVVVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATGN
HNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq 6408 nt   +upstreamnt  +downstreamnt
atggcggatgtaacagccagaagcttgcagtatgaatacaaagcgaactctaaccttgta
cttcaagctgatcgctccctgatagaccgtactcgcagagatgagcccacgggagaggtc
ctgtcattggtggggaagttggaaggaactcgtatgggtgacaaagctcaaaagaccaag
ccacagatgcaggaggaaagacggcttaagagaagaaaacgagatgaagacaggcatgac
atgaacaagatgaaaggatacactctgctgtctgaaggtatagatgaaatggtgggaatc
atatacaaacccaaaaccaaggagacacgagaaacctatgaagtgcttctcagcttcatc
caggctgcactaggagatcagccacgagacatcttgtgtggggcagcagatgaagttctg
gcagtgctgaagaatgacaaacttcgggataaagatagaaggagggaagtggatcaatta
ctagggcaaactgatgatactcggtaccatgtacttgtgaacctgggcaaaaagatttca
gactacgggggagacaaagaaattcaaaatatggatgacaatattgatgagacatatggg
gtgaatgtgcagtttgaatcagatgaggaggaaggagatgaggacgcatatggagaggtg
cgagatgaggcatctgatgacgatatggatggtgatgaagcggttgtgcgatgtactctg
tctgcaaatcttgcatcttctggagaattgatgagttccaagaagaaagatctccatccc
cgggacattgatgccttttggttgcaaagacaactcagccgcttctatgatgatgctatt
gtgtcccagaaaaaagcagatgaagttctggaaattctaaagactgcaggagatgatcgt
gaatgtgaaaaccaattggttcttttgctggggttcaacacatttgactttattaaagta
ctgcgacaacatcgtatgatgattctgtattgcacgctcttggcaagtgctcagagtgaa
gcagaaaaggaaaggataatgagcaaaatggagtccgatacagaactctctaaatatcta
taccagctacaggagacagaaaaagaggatctgattcgggaggcgcgtggacacagagac
aagattaggcagttaaatgtagacatggatttggaaagcatggaaacggaacaaggagag
gctttcactccacgtcaagtcttggacttggaggatttggtctttgcccagggtagtcat
ttcatggctaacaaacggtgccaactgcctgatggctccttcagacgtcagcggaaaggg
tatgaagaggtgcatgtgcctgcccttaaacccaaaccttttgcttctgatgagcaactg
gtcccagttgaaaagcttcctaaatatgctcagtctggctttgaaggcttcaagactcta
aatagaatccagagcaagttgtttaaagctgcattggaaacagatgagaacctgttgctt
tgtgctcccaccggagctggtaaaacaaatgtagctctgatgtgcatgcttcgggagatt
ggaaaacacataaatgtggatggcaccatcaatgtggacaacttcaaaataatttacatt
gctcccatgagatccctggtgcaggaaatggtgggcagcttcagcaagcgattgtcaaca
tatggcattaccgtggcagagttgacaggagatcaccagctgtgtaaagaagagatcaat
gccacacagatcatagtttgtaccccagaaaaatgggatatcatcacccgtaaaggaggg
gagagaacatacactcagctcgtccgtctgatcattctggatgaagtccacttgctgcat
gatgatagaggtccggtgctggaatctttggttgctcgggccatccgtaatattgagatg
acacaggaggatgtccggcttattggtcttagtgctactttgcccaactatgaggatgta
gccacatttcttcgcgtggaccctgccaaggggctcttttattttgacaacagttttcgt
ccagtgccactggaacagacctatgtaggtattacagagaaaaaggccatcaaacgcttc
cagattatgaatgagattgtttatgagaaaatcatggagcatgccggcaagaaccaggtg
ctggtgtttgttcattccaggaaggaaactggcaagacgtcccgtgctatcagagatatg
tgcctggagaaggacaccctgggtctgtttctgagagagggttctgcttcaactgaagtt
cttcgtactgaagccgagcaatgcaagaacctggaactgaaagatctcctgccttatggg
tttgctattcaccatgctggtatgagcagagttgacaggacactagtggaggatctgttt
gccgataaacacattcaggtcctggtttccacagcaactctggcttggggtgtcaatctc
ccagctcacactgttatcattaaagggacacaggtttatagtccagagaagggtcgttgg
acagagcttggtgccttggatatcctgcagatgcttggtagagctggacgtccccagtat
gatacaaagggtgagggaattctcatcacctcacacggggagttgcaatattacctgtct
ctgctgaaccagcagcttcctattgagagccaggtggttggaaggcttccagacatgctg
aatgcagaagtggtcttgggaaatgtacagactgctaaggatgctgtgaattggttaggc
tacacatacctatacatccgtatgttgcgctctccaaacctgtatggaatctcccacgat
gaccttaagattgaccctttgctggaacaccgacgtcttgatctaatacatacagctgcc
cttctcctcgacaagaacaacctggtgaaatatgataagaagactggtaatttccaggtt
actgagctgggtcgtattgccagtcatttctacatcaccaatgattccgtacaaacctac
aaccagctgttgaagccaactcttagtgagatcgagctttttcgtgtgttctctctttcc
tctgagttcaagaatatcactgtcagagaggaggaaaaactagaactgcagaagttgcta
gaaagagtacctatccctgtcaaagaaagcatagaggagccaagtgctaagatcaacgtg
ctgctgcaggctttcatttctcagctaaaactggaaggatttgctctgatggcagacatg
gtgtatgttacacagtctgcaggccgtctcatgcgagcaatatttgaaattgtccttaac
cgagggtgggcccaactgactgataaaactctgaatttgtgcaaaatgatcgacaagaga
atgtggcagtccatgtgtcctttacgccagttcaggaagttgccagaggaagtggtgaag
aagattgaaaaaaagaactttccttttgagcgtctttatgatttgaatcacaatgagatt
ggtgaactcatccgtatgcccaaaatggggaaaacaatccataaatacgttcacctgttc
cccaagttggatttgtctgtgcatctgcaacctatcactcggtccaccctcaaagtagag
ctcacaattaccccagatttccagtgggatgagaaggttcatggttcctctgaagctttc
tggatcctagtagaagacgtggacagtgaagtaatcctgcaccatgagtacttcctgcta
aaggccaaatacgcacaagatgagcatcttgttacgttttttgtaccagtctttgagcct
cttccacctcagtactttattcgagtggtgtctgatcgctggctctcatgtgaaacgcaa
ctcccagtatctttccgccatctgatccttcctgaaaagtacccaccacctactgagctg
ctggatctacagcccctgccagtttctgcccttaggaacagtgcatttgagagcttatac
caagataaatttccattctttaaccctatccagacccaagttttcaacaccatatacaac
agcgatgataatgtctttgtgggagctcccacgggaagtgggaagaccatttgtgctgaa
ttcgccatactcagaatgctgcttcagaattccgagggccggtgtgtttatataacccct
atggaagctctggctgaacaggtgttcatggactggtttgagaagttccaggacaggtta
tataagaaggttgtactgctcactggtgagaccagcacagatctgaaacttttggggaag
gggaacattattatcagcaccccagaaaagtgggatatcctgtcccgtcgttggaagcag
aggaagaatgtgcagaatgtcagtctctttattgtagatgagacgcacctcatcggagga
gccaatggacctgtgcttgaggtaatctgttccagaatgcggtacatctcctcccagata
gagaggcctatccgtgtcgtggcccttagctcctctctctccaatgccaaggatgttgct
cactggctgggttgcagtgcaactgccacatttaacttccatcccaatgtgaggccagtt
cctctggaattgcatatacagggctttaacatcagccacacacaaacgcggctgctttct
atggctaagccagtttaccacgccatcataaagcactctccaaagaaacccatcatcgtt
tttgttccgtctcggaaacagacgcgtctcactgctattgatattcttactacctgcgca
gcggatgtgcagagacagaggttcctgcactgtacagagaaggatttggctccgtacttg
gaaaagttgagtgatggaactctgaaggaaaccttgttgaatggggtgggctacctgcat
gaaggcctgtcatcactggagagacgaattgtggagcagttattcaacactggtgcagta
caggtgattgtggcctcgcgcagtctttgctggggacttaacattgcggctcatctggtg
attatcatggacactcagtactataacggcaagattcatgcgtacgttgattatcccatc
tatgatgtccttcagatggtgggatatgccaaccgccccctgcaggacgatgaagggcga
tgtgttattatgtgccaaggttcaaagaaggatttctttaagaagttcctgtatgagcct
ttgcctgtagaatcccacttggatcactgcatgcacgaccacttcaacgcagagattgtc
accaagactattgagaataaacaggatgctgtggattatttaacttggactttcctctat
aggcgcatgacccaaaaccccaactactataatcttcagggcgtttctcacaggcacctt
tctgatcacctttctgaactggttgaacacacactaagtgaccttgagcagtccaaatgc
atcagcattgaagatgaaatggatgtggctcctctaaacttaggaatgattgctgcttat
tactacatcaactacaccaccattgaactcttcagcatgtctctgaatgccaagaccaaa
gtgcggggtcttatagaaataatatctaatgccgccgagtatgaaagcatacccatacgt
catcacgaggacaatctgctccgccagcttgcacagaaagtaccccacaaactcaccaac
cccaaattcaacgatcctcatgtgaagaccaatttgctgcttcaggctcatctctcccga
atgcagctgagtgcagagcttcagtcagataccgaggagatcctcggaaaggcagttcga
cttatccaggcctgtgtggatgtgctttccagtaatggctggctaagcccagctcttgct
gccatggaactggcccagatggttactcaggctatgtggtccaaggattcctatctgagg
cagctgcctcacttcagctcagagcacatcaaacgatgcacagacaaggaagtggagagt
gtatttgatattatggagatggaggatgaagaacgttcagagttactgcagctttcagat
tcccagatggcagatgtagcaagattctgcaaccgctaccccaacatagaactgtcctac
gaagtggcagagagagactccatcagaagtggtggagctgtcgttgttctggttcagttg
gagcgtgaggaggaagttacaggacctgttatagctcctctcttcccacagaaacgcgag
gaaggctggtgggttgtgatcggcgattccaagtccaacagtctgatttcaatcaagaga
ctgaccctgcagcagaaagctaaggtaaagctggactttgtagcacctgctactggaaac
cacaactacaccctgtatttcatgagcgacgcatacatgggttgtgaccaggagtacaag
ttcagtgttgacgtgaaggaggcagagagtgacagtgactctgattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (11)   
   Pfam (11)   
All databases (50)   

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