KEGG   Xenopus laevis (African clawed frog): 108703024
Entry
108703024         CDS       T01010                                 
Symbol
col6a2.S
Name
(RefSeq) collagen alpha-2(VI) chain
  KO
K06238  collagen type VI alpha
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla04510  Focal adhesion
xla04512  ECM-receptor interaction
xla04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xla00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    108703024 (col6a2.S)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    108703024 (col6a2.S)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    108703024 (col6a2.S)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:xla04147]
    108703024 (col6a2.S)
   00536 Glycosaminoglycan binding proteins [BR:xla00536]
    108703024 (col6a2.S)
Exosome [BR:xla04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   108703024 (col6a2.S)
Glycosaminoglycan binding proteins [BR:xla00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   108703024 (col6a2.S)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   108703024 (col6a2.S)
SSDB
Motif
Pfam: VWA Collagen VWA_2
Other DBs
NCBI-GeneID: 108703024
NCBI-ProteinID: XP_018094397
Xenbase: XB-GENE-17345156
UniProt: A0A1L8EPJ5 A0A974BVJ4
Position
9_10S:72048090..72072650
AA seq 1014 aa
MAWVLRLCLLLCALFASLSAQDVAGSKPCSDKIKCPINVFFIIDTSESIILQTAPIEILL
DNMKVFIPRFLDKLEDAAYLDQVVLNWHYGGLHYSDEVIIFSDITTNKQEYISKLKAVNY
IGRGTFTDCALSNMTALIQKQGDDAINFAVVITDGHVTGSPCGGMMHQADRARNAGIKLF
SVAASHDVYESGLREIANTPYELFRNSYSLSRADDRTVINDKTIDKIIQVMKHEAYGECY
KPSCLEIPGPPGPHGQRGQKGAKGNAGLPGDPGEKGRQGDPGIEGPIGYPGPKGVPGLKG
EKGDYGADGRKGAAGAHGRNGTDGHKGKQGRIGAPGCKGDLGNRGSDGYPGSPGDIGEAG
DKGQKGDSGRPGRTGPPGPFGEKGNKGPSGNAGAPGPPGLKGGKGGPGGPGPEGEPGRRG
DSGNKGAPGTDGTKGDKGDPGPEGLRGLIGEVGLKGAKGDRGGPGPRGAQGNVGVPGRNG
SRGDPGDMGERGNPGPQGPKGDRGRPGISYPGRRGESGDKGEKGMPGPLGGRGDFGLKGS
PGPNGVKGEPGDPGITGEPGKRGEPGDPGSEGDVGPPGDSGLTECDVMTYVRETCGCCDC
EKRCGALDIVFIIDSSESIGYTNFSLEKNFVINVVSRLGAIAKDPKSDTGARVGVVQYSH
EGTFEAIQLDDPRIDSLSSFKEAVRRLEWIAGGTWTPSALQFAYNKLIKETRRDKAKVFA
VVLTDGRHDPRDPDERLQVLCGGDVDVNAIGIGDMFNKPEEDETLTSIACNNKGRVTKMK
LFSELVADEFIDNMEEVLCPDPQVVCPDLPCQTELSVAQCTQRPVDLVFLMDGSMRTGEQ
NFKYATGFVDEVAQRLSLARRHDDPSNARVSLVQFGGQDKQSVAFPLAFDLTEVSQAIEK
LQYNGSSAVIGSAIIYAINNVLQNSGRPARRYAEPSFVFITDGETGPEGLEEAVTAMRKN
NVVSTLVSVGPEDSIDMKVLRQLSMGERAAIFRQTDYSKLTENSFMDRFIRWVC
NT seq 3045 nt   +upstreamnt  +downstreamnt
atggcgtgggtactccggttgtgtttgctgctttgtgctctttttgccagtctctcagcc
caggatgtggctggctcaaagccatgttcagataaaatcaagtgcccaatcaatgtgttc
tttatcattgacacatctgaaagtatcatcctgcagactgctcccattgagattttgcta
gataacatgaaagtattcatcccaagattccttgataagttggaggatgctgcttatttg
gaccaggtggtactcaactggcattacggaggtctgcattattctgatgaagtgatcata
ttcagtgatatcactaccaacaagcaggagtacatatcaaaactgaaagcagtcaattac
ataggacgtggtactttcactgactgtgccctctccaacatgacggccttgattcaaaaa
caaggcgatgatgctatcaactttgcagtggttatcacagacggtcatgtaactggcagc
ccctgtggagggatgatgcatcaggcagatcgcgcaaggaatgctggtatcaagttgttc
tctgtagctgccagccatgatgtatatgagtctggcctccgggagattgcaaatacaccc
tatgagctcttccggaattcgtattccttgtctcgagctgatgatcgtacagttatcaat
gacaaaactattgacaaaatcattcaagtaatgaaacatgaagcttatggagagtgctac
aaaccgagttgcctggagattcctggcccaccaggtccccatggacaaagaggacaaaag
ggtgccaagggaaatgctggactacctggagatccaggagagaaaggacgacagggcgac
ccaggtattgaaggaccaatcggttatcctggtcccaagggagttccaggcctgaaaggt
gaaaagggagattatggagcagatggaaggaagggagcagctggagctcatggaagaaat
gggacagatggacataagggtaaacaaggtcgtattggtgcacctggctgtaagggagac
cttggcaataggggttctgatggttacccaggaagtcccggcgacataggggaagctgga
gacaaaggccaaaagggtgattctggtcggcctggacgtactggaccacctggtcctttt
ggagaaaagggaaataagggcccttctggtaatgcaggagcaccgggacccccaggacta
aaagggggtaaaggaggccctggaggaccaggaccagaaggagaaccaggtcgcagaggg
gactcaggtaataagggagctccaggaactgatggaactaaaggagacaagggagatcct
ggtcctgagggcctaagaggacttattggagaagttggattaaaaggagcaaagggtgat
cgtggaggaccaggacctagaggggcacaaggaaatgttggggtcccaggcaggaatgga
tcacgtggagacccaggagacatgggtgagagaggaaacccaggtccccaaggacctaag
ggagacagaggcagaccaggcatcagttacccaggtcgcagaggagaatcaggagataag
ggagaaaagggcatgcctgggccactgggtggacgaggagactttggcctcaaaggatct
cctgggcccaatggagtaaaaggagagcctggggaccctggcataacaggagagcctggt
aaaagaggtgaacctggagacccaggaagtgagggtgatgtcggcccaccaggtgattca
ggattgactgagtgtgatgttatgacctatgtcagagagacctgtggatgctgtgattgc
gagaagcgctgtggggctttggacattgtgttcattattgacagctctgagagtatcggt
tacacaaatttctcactggagaagaactttgttatcaatgtggtgagcagactgggggcc
attgccaaggacccaaaatcagacacaggtgctcgtgttggagttgtccagtacagtcat
gaaggtacttttgaggcaattcaattggatgatcctcgtatcgattcactgtctagtttt
aaggaggcagtaagacgtcttgagtggattgcaggaggtacatggacaccatcggctttg
caatttgcctacaacaagcttatcaaagaaactcgtcgtgataaggcaaaggtatttgct
gtggtccttactgatggtcgccatgatcctcgtgacccagatgaacgccttcaggtgctt
tgcggtggggatgtagatgtcaatgccattggtattggtgatatgtttaacaagccagaa
gaagatgagaccctgacttccattgcctgcaacaataaggggcgagtgacgaaaatgaaa
ctcttttctgaacttgtagctgatgaattcatagacaacatggaagaagtgctttgccca
gaccctcaagttgtgtgtccggacctgccatgccaaacagaactttcagtcgctcagtgc
acacagcgccctgtggatctagttttcctcatggatgggtctatgagaactggagagcaa
aacttcaagtatgcaacaggttttgtggatgaagtggctcagaggctgtctttggcgaga
aggcacgatgatccttccaatgctcgagtatctctagtgcagtttggaggacaggacaaa
caatcagttgctttccctctggcctttgaccttacagaggtttcccaggccatagaaaag
ctgcagtataatggatcatctgccgtcattggatcagcaatcatttatgccatcaacaat
gtcctccaaaattcaggccgtccagcaagacggtatgcagagccttctttcgtcttcata
actgatggagagacgggaccggaaggactagaagaagcagtcactgccatgaggaaaaat
aatgtagtttcgaccctagtatcagtgggacctgaagattccattgatatgaaggttttg
aggcaactcagtatgggtgagagggcagccatctttagacaaactgactacagcaagctg
actgagaatagttttatggacagattcatacgctgggtgtgctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (42)   

Download RDF
DBGET integrated database retrieval system