KEGG   Xenopus laevis (African clawed frog): 734550
Entry
734550            CDS       T01010                                 
Symbol
pcgf1.L, nspc1, pcgf1, rnf3a-2, rnf68
Name
(RefSeq) polycomb group RING finger protein 1
  KO
K11487  polycomb group RING finger protein 1
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    734550 (pcgf1.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xla03036]
    734550 (pcgf1.L)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     734550 (pcgf1.L)
SSDB
Motif
Pfam: RAWUL zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-rbx1 zf-C3HC4_3 zf-RING_UBOX zf-RING_5 TRAF3_RING zf-Nse EHMT1-2_CRR zf-C3HC4_4 zf-ANAPC11 zf-RING_6 Prok-RING_4
Other DBs
NCBI-GeneID: 734550
NCBI-ProteinID: NP_001089498
Xenbase: XB-GENE-6255892
UniProt: Q4QR06
Position
1L:373992..387654
AA seq 259 aa
MASQGPLVIAMRLRNQLQSVYKMDPLRNEEVVKVKIKELNEHIVCYLCAGYFIDATTITE
CLHTFCKSCIVKYLQTSKYCPLCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQENEDSR
IRDFYHSRGLERVLQPSAVEDSVGDVSQLSLSLAVSQKTSHYYRNDEHVCLCLEKVSSGK
DKKKFILQQKYVRCSVRSEIRHLRRVLSHRLSAPLAQVQLLIDNKVLPDHMTMKQLWLMH
WYGKPAPLVLLYSVKEKRR
NT seq 780 nt   +upstreamnt  +downstreamnt
atggcgtcgcaagggccgttagtgatagcgatgcggctccggaaccagctccagtcggtt
tataagatggacccacttaggaacgaggaagtggtgaaggtgaaaatcaaggagctgaat
gagcacatcgtgtgttacctgtgtgccggctacttcatagatgccacaaccataacggaa
tgtctgcacaccttctgtaagagctgcatagtgaagtacctacagaccagcaagtactgc
cccctgtgcaacatcaagatccacgagactcagcccctcctcaatctcaagctggaccgg
gtcatgcaggacattgtctacaagctggtgccgggccttcaggagaatgaagacagtcgc
atcagagatttctaccattcccgtgggttggagcgagttcttcagccaagtgcagtcgaa
gactctgtgggagatgtctcgcagctgtctctttccttggcagtctctcagaagacgtcc
cactattacaggaacgatgagcatgtctgtctttgtcttgagaaagtcagttctgggaag
gacaagaagaagtttatcctacagcagaaatatgtgcgttgttctgtccggtctgagatt
cgtcacctgcgtcgggttcttagtcatcggctcagcgcaccactggcacaggtgcagctc
ctgattgataacaaagtgctgccagatcacatgaccatgaagcagctgtggttgatgcac
tggtacggcaagccggcaccgcttgttctgttgtacagcgtcaaggagaagaggaggtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (18)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (15)   
   Pfam (15)   
All databases (43)   

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