KEGG   Xiphophorus maculatus (southern platyfish): 102217615
Entry
102217615         CDS       T02923                                 
Symbol
mbd4
Name
(RefSeq) methyl-CpG-binding domain protein 4 isoform X1
  KO
K10801  methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    102217615 (mbd4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xma03036]
    102217615 (mbd4)
   03400 DNA repair and recombination proteins [BR:xma03400]
    102217615 (mbd4)
Chromosome and associated proteins [BR:xma03036]
 Eukaryotic type
  Heterochromatin formation proteins
   MBPs (metylated DNA binding proteins)
    102217615 (mbd4)
DNA repair and recombination proteins [BR:xma03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     102217615 (mbd4)
SSDB
Motif
Pfam: MBD HhH-GPD
Other DBs
NCBI-GeneID: 102217615
NCBI-ProteinID: XP_005805745
UniProt: A0A3B5QSM0
Position
1:20589144..20593191
AA seq 451 aa
MDVQSNKEALPHGWIREVRQRKAGKTAGKLDVYIISPSGQRFRSKSSLHDYLLKNGGENL
DINLFDFTSSKTKFTSSETDHSKETQEKWTKKQANGQQEQIGGKVKSARHKSKNSSSSTR
CKVSKSKVKPAVEDIRSNILQEDIAEEAEQISSQATSSSDLADDDDTHKSPRRVGLLREK
ILRLAPSSDQRNTFLPAHRNQLANTPPLVPTLSVEAATESEDESENVANTDVAQAHSKGD
KSNSEVVDNADSHREEEVLPDNSGGSCTPVRDSHNRSKNLESRRKTSPYFSGKHLKDGLS
PPRRKSLRKWTPPRSPFNLIQETLFHDPWKLLVATIFLNKTSGKMAIPVLWVFFERYPSA
EVTREADWKPMSELMKPLGLYELRAKTIIRFSDEFLNKQWRYPIELHGIGKYGNDSYRIF
CVDEWRQVTPKDHKLNKYHAWLWENHKTLGI
NT seq 1356 nt   +upstreamnt  +downstreamnt
atggatgtccagagtaacaaggaagcactgccacatggatggattagagaagtgaggcag
agaaaagctggcaagactgcaggaaaactggacgtgtacataataagtcccagtggacag
aggttccggtctaagtcgtccttgcatgattacctgttgaaaaatggaggagagaacctg
gacataaacctgtttgatttcacctcatccaaaactaaattcaccagctctgaaacagat
cattccaaagaaacacaagagaaatggacgaaaaagcaagcaaatggacagcaggaacaa
ataggtggaaaagtgaagtctgccagacataaatctaaaaacagctcttcctctaccaga
tgtaaagtcagcaagagcaaggtaaagcctgctgttgaggatattagaagtaatattttg
caagaggacatagctgaggaggctgagcagattagctcacaagctacatcttcatcagac
ttggcggatgatgatgatacacacaagagcccccggagggtgggactgctgagggagaaa
attctgagactggctccttccagtgatcaacgaaacaccttccttccagctcacaggaat
caactggcaaacacgccgcctttggtcccgactctgagtgttgaagctgccactgagagc
gaggatgaaagtgagaatgtggcaaacacagatgttgcacaggctcacagcaaaggtgac
aagtctaattcagaggtagtggataatgctgacagtcacagagaggaggaggtgttacct
gacaacagtggtggaagctgtacaccagttagagattcccataatagatccaagaatttg
gagagcaggcggaaaacaagcccttatttcagtgggaaacatctcaaagatggactcagc
ccacccaggagaaaatctctcagaaaatggacacctcccaggtctcccttcaacctcata
caggaaacccttttccatgacccctggaagctcctggtggccactatttttctgaataag
acaagtggaaaaatggccattccagtgctttgggtgttctttgagcgctacccgtctgca
gaggtgacccgggaggcagactggaagcccatgtctgaactcatgaagccacttgggctc
tatgagcttcgagccaaaacaatcatccgcttctccgatgagtttttaaataaacagtgg
cgttaccctattgagttgcatggtattggcaagtacgggaacgactcctacaggatcttc
tgtgttgatgagtggagacaggtgactcctaaagatcacaagttaaataaataccatgcc
tggctgtgggagaaccataaaacattgggaatctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (46)   

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