KEGG   Xiphophorus maculatus (southern platyfish): 102229978
Entry
102229978         CDS       T02923                                 
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
  KO
K06236  collagen type I alpha
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma04510  Focal adhesion
xma04512  ECM-receptor interaction
xma04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:xma00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102229978
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102229978
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102229978
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:xma00536]
    102229978
Glycosaminoglycan binding proteins [BR:xma00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102229978
SSDB
Motif
Pfam: Collagen COLFI VWC TILa
Other DBs
NCBI-GeneID: 102229978
NCBI-ProteinID: XP_023196785
Ensembl: ENSXMAG00000017341
Position
10:complement(13873632..13893254)
AA seq 1446 aa
MFSFVDIRLALLLSATVLLARGQGEDDKQFGSCTSEGQSYNDKDVWKPEPCQICVCDMGT
ILCDEVICDDTSHCEDPYIPDGECCPVCPDEGPPTEPTIPKGPTGPRGDPGLPGLPGNDG
IPGTPGLPGPPGLPGIPGLGGNFSPQMSYFDPSKSSGPPVPGPIGPPGPRGAPGLPGPPG
PSGSPGPQGEPGEPGAVGPMGPRGPAGPPGKNGDDGEAGKAGRPGERGAAGPQGARGFPG
TPGLPGIKGHRGFPGLDGAKGDSGPAGPKGEPGVPGENGIPGAMGARGLPGERGRPGPAG
PAGARGNDGNTGPAGPPGPTGSAGPPGFPGAVGAKGETGPAGGRGSEGPQGARGEPGNPG
PAGPAGPAGSPGSDGQPGAKGANGAPGIAGAPGFPGNRGPAGAQGGAGAPGPKGNNGEPG
PPGPKGEAGAKGEPGPAGLQGLSGPSGEEGKRGPRGEPGGAGPRGPPGERGAPGARGFPG
SDGAAGGKGAPGERGAPGPMGSQGATGEGGSSGAPGAPGSKGVTGSPGSPGPDGKVGPAG
APGQDGRPGPPGPSGSRGQPGVMGFPGPKGAAGESGKPGERGPGGAGGSVGAPGKDGDVG
APGPSGPAGPAGEKGEQGPSGAPGFQGLPGPQGATGESGKPGEQGVPGEAGPPGPSGPRG
DRGFPGERGGPGPAGPTGSRGSPGAGGSDGPKGEPGAGGAPGSAGLPGMQGMPGERGSAG
IPGPKGERGDAGAKGSDGAAGKDGVRGLTGAIGLPGPPGSQGEKGESGPSGVVGPSGPRG
SPGERGETGPAGPAGFAGPPGADGQPGAKGESGDTGPKGDAGPAGPPGPVGSSGPQGPSG
ATGPKGARGGAGPPGSTGFPGPAGRVGPPGPSGAAGPPGPPGPVGKDGPRGSRGETGPAG
RPGESGAAGAPGPSGEKGSPGSDGSPGAPGLPGPQGIAGVRGIVGLTGQRGERGSSGIPG
PAGEPGKQGPSGLVGERGPPGPAGPPGLSGAPGEAGREGSPGHDGASGRDGPPGPKGDRG
ESGMAGPPGPPGAPGAPGGVGPSGKSGERGESGPAGPVGPAGIGGPRGSSGPAGAKGDRG
EAGEAGDRGHKGHRGLSGQPGLPGPPGVHGDRGPAGASGPAGPRGPSGNNGSPGKDGQNG
MPGPIGPPGPRGRNGELGPSGPPGPPGPPGPPGAPGSAFELISPPQQEKGPDPLRGGYRA
DDPNMMRDRDMEVDTTLKTLTQKVENIRSPDGSQKSPARMCRDLRMCHPEWKSGTYWVDP
NQGSSLDAIQVHCNMETGETCVYPIDSNIPMKNWYLSKNLREKKHIWFSESMTGGFQFQY
GTEGADPEDVNIQISFMRLMSNQASQNVTYHCKNSIAYMDSAAGNLKKALLLQGSNDVEI
RAEGNSRFTYSVSEDGCSSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGVEV
GPVCFL
NT seq 4341 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggatattcggttagcgcttttgctcagcgcaacagtgcttttggcg
agaggtcaaggcgaggatgataagcaatttggcagctgcacatcagaaggacagtcgtac
aacgacaaggatgtatggaaaccagaaccctgccagatctgcgtgtgcgatatggggacc
atcctgtgcgacgaggtgatctgcgacgacacgtcccattgtgaagacccctacattcca
gatggagagtgctgccctgtctgccccgatgagggtcctcccactgaacctacgattcca
aagggacccactggccccagaggagatccgggccttcctggtctccctggcaatgatgga
atccccggaacgcctggcttgcccggcccacctggcctccctggcatccctggccttggt
ggaaacttctctcctcaaatgagctacttcgacccctccaagtccagcggcccacccgtc
cccggcccaattggtcctcctggtccccgtggtgctcctggtcttcccggcccacccggt
ccttcaggtagcccagggccccaaggagagcctggtgagcccggtgctgtgggtccaatg
ggtccccgcggtcccgcaggccctcccggaaagaatggagatgatggtgaggctggtaaa
gctggacgccccggtgagcgcggagctgctggccctcagggtgctcgtggattccccgga
acccctggactgcctggcatcaagggacacagaggtttccccggtcttgatggagccaag
ggagacagtggacctgctggtcctaagggagagcctggtgtccccggagagaatggcatc
ccaggtgccatgggtgcccgtggtcttcctggtgagagaggccgccccggacctgctggc
cctgctggtgctcgtggtaacgatggcaacaccggccctgctggtcctcccggacccact
ggatctgccggaccccctggattccccggtgctgtcggtgctaagggtgagaccggtcct
gccggaggtcgtggatctgagggaccccagggagcccgtggtgagcccggtaacccagga
cctgctggacccgctggacctgctggttctcctggatctgatggtcagcctggtgctaaa
ggtgctaatggcgctcccggtatcgctggtgctcctggtttccccggtaaccgtggtcct
gctggagctcagggaggcgctggtgctcccggtcccaagggtaacaatggcgagcctggt
cctccaggtcctaagggagaggctggtgccaagggtgagcctggcccagctggacttcag
ggactttctggcccctctggtgaggagggaaagcgaggacctcgtggagagcctggtggt
gccggaccccgtggaccccctggagagcgtggcgcccccggtgctcgcggtttccctggt
tctgatggagctgctggtggaaagggcgccccaggtgagcgcggtgcccccggaccaatg
ggatctcagggagccaccggtgagggcggaagctccggcgctcctggcgctccaggatca
aagggtgtgaccggtagccccggaagccccggccctgacggcaaagtcggacctgctggt
gctcctggtcaagatggccgccccggacctcctggcccctctggatccagaggacaaccc
ggagtcatgggattccccggacccaagggagctgctggcgaatctggtaaacctggcgag
agaggacctggtggagctggtggctcagttggtgctcccggcaaagatggtgatgttgga
gctcccggaccttctggacctgctggacctgctggagagaaaggagagcagggaccatct
ggtgcaccaggattccaaggtcttcctggaccccaaggtgctactggtgagagtggcaag
cctggcgagcagggcgttcctggagaggccggaccacctggcccatctggacccagaggt
gacagaggcttccctggtgagcgtggtggtcccgggcctgccggtccaactggatcccgt
ggctcccctggtgctggtggaagcgatggacctaagggagagcctggagctggtggcgcc
cccggtagtgctggactccctggtatgcagggaatgcctggagagcgaggatctgccggt
attcctggacccaagggagagagaggagacgctggtgctaagggttctgacggcgccgct
ggcaaagatggcgtgcgcggtctgactggtgctattggacttcctggacctcctggttct
cagggtgagaagggagagtctggtccctctggagtcgttggaccctctggtcctcgtggt
tcccctggtgagcgtggagagactggacctgctggacctgctggattcgctggacctcct
ggtgctgatggtcagcctggtgccaagggagagagtggtgacaccggaccaaagggagac
gccggccctgctggacctcctggacctgtcggatcttccggtcctcagggaccttctggt
gctactggacccaaaggtgctcgtggtggtgctggacctcctggttctactggtttccct
ggacctgccggcagagttggcccccctggcccctctggagctgctggaccccctggaccc
cccggacctgttggaaaggacggaccccgaggatcccgtggtgagaccggccctgctggt
cgccctggtgagtctggtgctgccggtgctcccggtcccagtggagaaaagggatcccct
ggctctgacggatcccctggtgcccctggtctgcctggaccccagggtattgctggagtg
agaggtattgtaggtctcactggacagcgtggagagcgtggttcctctggtatccctggc
cccgctggtgagcctggtaagcagggaccttctggccttgttggtgagcgtggaccccct
ggacctgctggaccccctggactgtctggtgcccccggagaggctggtcgtgagggatct
cctggtcatgatggtgcttctggccgtgacggtcctcctggccccaagggagaccgtggt
gagagtggcatggctggaccccctggacctcctggtgctcctggagcccccggaggtgtc
ggcccctccggcaaaagcggtgaacgcggagagagtggtcctgctggtcccgttggtcct
gctggtattggtgggccccgtggttcttctggccctgctggtgctaagggagacagagga
gaggctggtgaggctggagatagaggccacaagggacacagaggactcagcggacagcct
ggtctgcctggacctcctggagttcatggagacagaggacccgctggtgcttccggaccc
gctggaccccgaggaccatctggaaacaacggcagccctggtaaggacggtcagaacggt
atgcccggacccatcggaccccctggacctcgtggtcgcaatggagagttgggaccttct
ggtcctcctggacctcctggaccccctggacctcctggagcccctggcagtgcctttgaa
ctcatctcaccaccccagcaggagaagggcccagatcctctccgtggtggctaccgcgct
gatgaccccaacatgatgcgcgaccgtgacatggaggtcgacaccaccttgaagaccctg
acccagaaagtcgagaatatccgcagccccgacggctcccagaagagccctgctcgcatg
tgccgtgacctgagaatgtgccaccctgaatggaagagcggcacatactgggttgacccc
aaccagggctcttctctggacgccatccaggtccactgcaacatggagactggagagacc
tgcgtctaccccatcgattccaacatccccatgaagaactggtacctcagcaagaacctc
agagagaagaagcacatctggttcagcgagtccatgacaggtggattccagttccagtat
ggcaccgagggagctgatcccgaggacgtcaacatccagatctccttcatgcgcctgatg
tccaaccaggcctcacagaacgtgacatatcactgcaagaacagcatcgcctacatggat
tctgcagcaggcaacctgaagaaggccctccttctccagggctccaacgatgtcgagatc
agagccgaaggcaacagccgcttcacatacagcgtcagcgaggatggctgctcgtcacac
actggcacatggggcaagacagtcatcgactacaagacatcgaaaacatcccgactgccc
atcattgacattgctcctatggatgttggtgcacccgatcaggaatttggcgttgaagtt
ggccccgtttgcttcttgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (139)   
   KEGG ORTHOLOGY (1)   
   RefGene (134)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (155)   

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