KEGG   Xanthomonas oryzae pv. oryzicola CFBP7342: BE73_14440
Entry
BE73_14440        CDS       T03868                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
xoz  Xanthomonas oryzae pv. oryzicola CFBP7342
Pathway
xoz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xoz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BE73_14440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xoz03019]
    BE73_14440
   03016 Transfer RNA biogenesis [BR:xoz03016]
    BE73_14440
Enzymes [BR:xoz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     BE73_14440
Messenger RNA biogenesis [BR:xoz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BE73_14440
Transfer RNA biogenesis [BR:xoz03016]
 Prokaryotic type
  tRNA degradation factors
   BE73_14440
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH_2 KhpA-B_KH S1_2 Phage_tube KH_5
Other DBs
NCBI-ProteinID: AJQ88112
Position
complement(3017709..3019823)
AA seq 704 aa
MAKITKTFQYGKHTVTLETGEIARQAGGAVIVKFDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSMN
PDIDGDIAALIGASAALSLAGTPFNGPIAAAKVGYKNGEYILNPTVTELKDSQLELVVAG
TANAVLMVESEAELLSEEVMLGAVTFGHREMQKVINIINELTVEAGTKPSDWVAPAKNDG
MIAALKEAVGDQLASAFQVRDKLQRRDAISAIKKDVLGALAPRATIEGWAAGDLAKEFGE
LEYQTMRGSVLSTKVRIDGRALDTVRPISAKAGVLPRTHGSALFTRGETQAIVITTLGTA
RDGQVIDAVSGEYKENFLFHYNFPPYSVGECGRFGAPKRREIGHGRLAKRGVLAVMPSLE
EFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGNDFVVLS
DILGDEDHLGDMDFKVAGTAEGVSALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
ALTTPRQELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIIIAS
VNAIAAQAAKSRIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVGDKLKEGDLVRVKVLEVDKQGRIRLSIKAVEEGEGVPASAE
NT seq 2115 nt   +upstreamnt  +downstreamnt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcacccttgagacgggc
gaaatcgctcgccaggcaggcggcgctgtcatcgtcaagttcgacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaagggcaggacttctttcccctgacggtc
gattatcaggagaagttctacgccggcggccgcatcccgggcggcttcttcaagcgcgaa
ggacgtgcgaccgagaaggaaacgttgatctcgcgcctgatcgatcgtccgatccgtccg
ctgttcccggaggactacaagaacgaagtgcagatcatcgccacggtgatgtcgatgaac
ccggacatcgacggcgatatcgccgcgctgatcggcgcatcggccgcgctgtcgctggcc
ggcactccgttcaacggcccgatcgctgcggcgaaggtcggttacaagaatggcgaatac
atcctcaatccgaccgtgaccgagctgaaggattcgcagctggagttggtcgtggccggt
accgccaatgcggtgctgatggtcgagtccgaagccgagttgctgtcggaagaagtgatg
ctgggcgcggtgacgttcggccatcgcgaaatgcagaaagtcatcaacatcatcaacgag
ctgaccgtcgaagccggcaccaagccgtccgattgggtggctccggcgaagaacgacggc
atgatcgccgcgctgaaggaagcagtgggcgaccagctcgcttcggctttccaggtgcgc
gacaagctgcagcgccgcgatgcgatttcggcgatcaagaaggacgtgctgggtgcgctg
gcgccgcgcgccacgatcgaaggctgggctgccggtgatctggccaaggaattcggcgag
ctggaataccagaccatgcgtggctcggtgctgagcaccaaggtgcgtatcgacggccgt
gcactggataccgtgcgtccgatcagcgccaaggccggcgtgctgccgcggacccatggc
tcggcgctgttcacccgcggcgagacgcaggcgatcgtgatcaccacgctcggtaccgca
cgcgacggtcaggtcatcgacgcagtctcgggcgagtacaaggaaaacttcctgttccat
tacaacttccctccgtactcggtaggcgagtgcggtcgtttcggtgcaccgaagcgtcgc
gaaatcggtcacggccgtctggccaagcgcggcgtgcttgccgtgatgccgagcctggaa
gaattcccgtacaccatccgcgtggtttcggaaattaccgagtccaatggttcgtcctcg
atggcatcggtctgcggtagctcgctggcgctgatggacgccggtgtgccgatcaaggcg
ccggttgccggtatcgcgatgggcctggtcaaggaaggcaacgacttcgtcgtgctctcc
gacatcctgggcgacgaagatcatctgggcgacatggacttcaaggtggccggtactgcc
gaaggcgtgtccgcgctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggcattgcagcaggccaaggctggtcgtctgcacatcctgggcgagatggcgcat
gcactgaccacaccgcgtcaggaactgagcgactacgcgccgcgcctgctgaccatcaag
attcacccggacaagatccgcgaagtgatcggcaagggcggctcgaccatccaggcgatc
accaaggaaaccggtacgcagatcgacatccaggacgacggcacgatcatcattgcctcg
gtcaacgcgattgccgcgcaggctgcgaagtcacgcatcgagcagatcacctcggacgtg
gagccgggccgcatctatgaaggcaaggtcgccaagatcatggacttcggcgcgttcgtc
accatcctgccgggcaaggacggtctggtgcacgtctcccagatttccagcgagcgcgtg
gagaaggtcggcgacaagttgaaggaaggcgatctggtccgcgtcaaagtgctggaagtg
gacaagcagggccgcatccgtctgtcgatcaaggcagtggaagaaggcgaaggcgttccg
gcttcggccgagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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