KEGG   Xenopus tropicalis (tropical clawed frog): 100101797
Entry
100101797         CDS       T01011                                 
Symbol
smarca1
Name
(RefSeq) probable global transcription activator SNF2L1
  KO
K11727  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1 [EC:5.6.2.-]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    100101797 (smarca1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xtr03036]
    100101797 (smarca1)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Chromatin remodeling factors
   NuRF complex
    100101797 (smarca1)
   CERF complex
    100101797 (smarca1)
SSDB
Motif
Pfam: SNF2-rel_dom SLIDE HAND Helicase_C ResIII DEAD HDA2-3 Myb_DNA-binding DBINO UBA_2
Other DBs
NCBI-GeneID: 100101797
NCBI-ProteinID: XP_002931866
Xenbase: XB-GENE-492011
UniProt: A0A6I8S3L9
Position
8:complement(50383618..50462300)
AA seq 1034 aa
MEGDTMEVISDEEALPSTSQEHLAATEAPEEEEEEKNDPPFLLKLPPKASRPEKEIDPEY
EEKMKTDRSKRFEFLLKQTELFAHFIQPAAQKSPTSPLKVKLGRPKIKKDEKQNLLSAGD
YRHRRTEQEEDEELLSESRKTSNVCVRFEESPSYIKGGTLRDYQVRGLNWMISLYENGIN
GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWIPSLCAVCL
IGDKNARAAFIRDVMMPGEWDVCVTSYEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKL
SEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWFDTNNCLGDQKL
VERLHAVLKPFLLRRIKAEVEKSLPPKKEVKIYLGLGKMQREWYTKILMKDIDILNSAGK
MDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDTHLVYNSGKMVVLDKLLPKFKEQGS
RVLIFSQMTRVLDILEDYCMWRGYEYCRLDGQTPHEQREAAIETFNSPNSSKFIFMLSTR
AGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKTVRVFRLITDNTVEERIVER
AEIKLRLDSIVIQQGRLIDQQSNKLAKDEMLQMIRHGATHVFASKDSELTDEDITTILER
GERKTAEMAERLQKMGESSLRNFSVDTETSLYNFEGEDYREKQKLSMMEWIEPPKRERKA
NYAVDAYFRDALRVSEPRVPKAPRPPKQPNIQDFQFFPPRLFELLEKEILYYRKTIGYKV
PRSSDLPNASQIQKEEQRKIDEAEPLCSEESEEKEKLLTQGFTNWNKRDFNQFIKANEKY
GRDDIDNIAREVEGKTPEEVMDYSGVFWERCNELQDIEKIMAQIERGEARIQRRISIKKA
LDAKIARYKAPFHQLRIQYGTNKGKNYTEEEDRFLICMLHKMGFDKENVYEELRQCVRNA
PQFRFDWFIKSRTAMELQRRCNTLISLIEKENLEIEEKERAEKKKRQPKPQPSKRKADVV
PDSSGKKDAKKAKS
NT seq 3105 nt   +upstreamnt  +downstreamnt
atggaaggcgatacaatggaagttatatcagatgaggaagcactaccctccacttcacag
gagcatctcgccgccacagaggcccctgaggaagaggaggaggagaaaaatgaccccccc
tttctgctcaagcttcctcctaaggcttccagaccagagaaggaaattgatccagaatat
gaagaaaagatgaaaacagatcgctccaaaagatttgaattcctcctaaaacaaacagag
ctatttgcacattttattcagcctgcagctcagaagtccccaacatctcccctgaaagtg
aaattaggacgcccaaagataaagaaagatgaaaaacagaatttgttatctgctggcgac
tatcgacaccgacgcacagaacaagaagaagatgaagaactgctttctgaaagccgaaaa
acatccaatgtctgcgtgcggtttgaagagtcaccatcatatataaagggagggactctc
agagattaccaggttagagggctgaactggatgatttccctctatgagaatggcatcaat
ggcatattggcagatgagatgggtctgggaaagactctgcaaactattgccttgttgggc
taccttaaacattacagaaacattcctggtcctcatatggttctggttcctaaatctact
ctacacaactggatgaatgaattcaaacggtggattccatcactttgtgctgtctgtctt
attggtgacaaaaatgctcgggcagcttttatacgcgatgtgatgatgccaggagagtgg
gatgtttgtgttacttcctatgaaatggtcataaaagaaaaatctgtattcaagaagttt
aactggaggtacctcgtgattgatgaagcacacagaataaagaatgaaaaatcaaagtta
tcagaaatagttcgtgaatttaagaccacaaatcggttactgctgactggcactcccctc
cagaacaacctccatgagttgtgggcattacttaatttccttcttcctgatgtgtttaat
tcagcagaagattttgactcttggtttgatacaaacaattgccttggtgaccaaaagctt
gttgaaaggcttcatgctgttttaaagccatttcttttaaggcgcataaaagctgaagtt
gaaaaaagtctcccacctaaaaaggaagtcaaaatttacttgggacttggtaaaatgcag
agagaatggtatacaaaaattttaatgaaggatatagatattctaaactctgctggtaag
atggataagatgaggctactcaacatcctgatgcaactgcgcaaatgttgcaaccatcca
tatttatttgacggtgctgagccagggccaccttacaccacagacacacatcttgtgtac
aatagcgggaaaatggtagttttggacaagttgctaccaaagtttaaagaacaaggttcc
agagtcctgattttcagccagatgactagagtacttgacattctggaggattactgtatg
tggcgaggctatgagtactgtcggctagatggacagacaccacatgaacaaagagaggca
gcaatagagacttttaatagtcctaacagcagcaaattcattttcatgctgagtacccgt
gcaggaggccttggaataaatctggcgactgctgacgttgtgatcttatatgattcagac
tggaacccacaagtggacttacaagcaatggatcgtgctcatcgaattggacagaaaaag
acagtacgtgtattccgtctcatcacggataatactgtggaagaaaggatagtagaaaga
gctgagattaaactaaggctcgattctatagtcatacagcaaggaaggttaatagatcag
cagtcaaacaaactggcaaaagatgaaatgctccagatgatacgtcacggagcaactcat
gtgtttgcttcaaaggatagtgaactgacggatgaagatatcaccacaattttggaaaga
ggggaaagaaagactgctgaaatggcagagcgtttgcaaaaaatgggagagagctctcta
cgaaacttctccgtggacacagaaacaagtttatataactttgaaggagaagattatcga
gaaaagcaaaagctgagcatgatggaatggattgagccccctaaacgagagcgcaaagcc
aattatgcagtggatgcatatttcagagatgctttgcgtgtcagtgaacctagagtgcct
aaggcaccacggccaccaaagcagcccaacattcaagattttcagtttttcccaccaaga
ctgtttgagctattggaaaaggagattctttattacagaaagacaataggatataaggtc
cctagaagctcagacctcccaaatgcatctcagatacaaaaagaagagcagagaaagatt
gatgaagcagagcctctctgttctgaagagtctgaagagaaggaaaaacttcttacacag
ggcttcacaaattggaacaaacgagactttaaccagtttattaaagctaatgagaagtat
ggccgtgatgacattgataacattgcaagagaggtggaaggaaagacaccagaagaagtt
atggattattcaggagtgttttgggaacgctgtaatgaacttcaagacattgagaagatt
atggctcagatagagcgcggtgaagcaagaattcaaagaaggatcagtatcaagaaagcc
ttggatgccaaaattgcaaggtacaaagctccttttcatcagctgagaatccagtacggc
acaaacaaaggcaaaaactatacagaagaagaggacaggtttctcatatgcatgcttcat
aaaatgggctttgataaggaaaatgtatacgaggaattacgtcagtgcgtgcgaaatgct
cctcagtttaggtttgattggtttatcaaatcaaggactgccatggagctgcaaagacgc
tgcaatactcttatatcgctgatagaaaaagaaaacctagagatcgaagagaaagaaaga
gcagagaaaaagaaacgacagccaaagccacagccctctaaaagaaaagcagacgtcgta
cctgacagttctgggaaaaaggatgccaagaaagcaaaatcctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (10)   
   Pfam (10)   
All databases (24)   

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