KEGG   Xenopus tropicalis (tropical clawed frog): 549544
Entry
549544            CDS       T01011                                 
Symbol
nup88
Name
(RefSeq) nuclear pore complex protein Nup88
  KO
K14318  nuclear pore complex protein Nup88
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    549544 (nup88)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xtr03019]
    549544 (nup88)
Messenger RNA biogenesis [BR:xtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     549544 (nup88)
SSDB
Motif
Pfam: Nup88 HTH_Tnp_Tc3_1 DUF4290
Other DBs
NCBI-GeneID: 549544
NCBI-ProteinID: NP_001016790
Xenbase: XB-GENE-1004636
UniProt: F7C806
Position
2:complement(105068585..105087128)
AA seq 726 aa
MAAGEHWQSSLSEHALFSRLKERTREVEELREEGERRTRKDKQLRNLLCVLDGDLLVWDS
EECAFLTVRLRSLSVESTGSSGEQKLLCTNPPLFEVNEVLLSPTQHHVALVGSKGVMVLE
IPKRWGKKSEFEGGEKTVNCRAIPIAERIFTSSTSLVLKQALWYPSETQEPHLILLTSDN
ILRLYNLHDPLTPEKVISLSSAEEETTLPHNGRSYKASLGETAVACDFGPLTPLPKGFGQ
YNKEDTVAYPLYILYETGETYLMYIDLQKSNIKVGKLLGPLPMYPAAEDNYGYDACAVLC
LACVPNIIVIATESGLLYHCVVLEGEDDDEQTSNKSWNSSCDLIPSLYVFECVELELALK
LATEEEESMELDFSCPIKLHRDPICPSRYHCTHVAGVHSVGLAWFNKLEKFLGSGEEDKD
SLQELAAEQKCLVEHILCTKPLRCRLPSPIQGFWIISDLSLGTSMICITCDFECIARPLL
TTIRPPSPPLLCFKIDKSSTEIIPHVLEDVKGPFEEHIRGILRRNSANPLLLNSSSKDSS
PPPEECLQLLSRATQVFREEYLLKQDLAKEEIQRRVKLLIVQKEKQLEDLQYCKEERKSL
TEMAERLAEKFEEAKEKQEDLINRLKRILRCFNTQLPVLSESERDMKKELHATQEQLQQL
GNAINQVNRKMSYQEKQMEKGKSPRKSSLTLSDYQKKNIKVVLKEHGENIQEMVKQINNV
RNHVNF
NT seq 2181 nt   +upstreamnt  +downstreamnt
atggcggcgggggaacattggcagagctcgcttagtgaacatgcgctcttctcccgtctg
aaagaacggacgagggaagtcgaagaacttagggaagagggtgaaaggcggacaaggaaa
gacaagcaactgaggaacttgctgtgcgtcctcgatggagatctattggtgtgggactcg
gaggagtgcgcctttctcactgtcagactgaggagtctaagtgtggagagcacagggagc
agtggtgagcagaaactgctttgtacaaatcctccactttttgaagttaatgaggtgttg
ctaagccccacacaacatcatgttgctctggttggaagcaaaggagtgatggtgctggag
attcctaaacgctggggaaagaaatctgaatttgagggcggtgaaaagacagtgaactgc
agggctatccccatcgctgaaaggattttcacaagctctacctctttagttctgaagcag
gccctctggtacccaagtgagacccaggaacctcatttaattttgctgacatctgataac
atattaagattatataatcttcacgatccactgacacctgaaaaagttatctccctctcc
agtgctgaagaggaaaccacactgccccataatgggcgatcttataaagcctcccttggt
gagactgcagttgcttgtgatttcggtccacttacaccccttccaaaaggttttggacaa
tataataaggaagacacggtggcttatcctctttatatcttatatgaaactggagaaacc
tacctgatgtacattgatcttcagaagagcaacatcaaagtgggtaaacttctaggccca
cttccaatgtacccagctgcagaagataactatggctatgatgcatgtgctgtgctctgc
ttagcatgtgttccaaacataatagttattgccactgaatcaggattactatatcactgt
gtggtgctggaaggcgaagatgacgatgagcaaacatcaaacaagtcttggaatagcagc
tgtgacctgatcccatcactctatgtttttgaatgtgttgaactggagcttgctttgaaa
ttggcaacagaagaggaagaatctatggagctagatttttcatgtcctattaaacttcac
agagaccctatctgcccatcccgataccattgcacccatgtggctggtgttcacagtgtg
gggctggcatggttcaacaaattagaaaagtttcttggttcaggtgaagaagataaagat
agcttacaagaacttgcagcggagcaaaagtgccttgtggaacacatcttatgtaccaag
cctctacggtgcaggctgccgtctcctattcaaggcttttggatcatctcagatctttca
cttggcacctcgatgatatgcattacatgtgactttgagtgtattgcaaggccattgcta
accaccattcgaccaccctctccacctcttctttgctttaagattgacaaaagttccaca
gagatcattccacatgtcctagaagatgtaaaagggccatttgaagagcacatcagaggc
attttaagacgcaactctgcaaacccattgttgttgaactcatcaagcaaagattcctct
cctccacctgaggagtgtctacagcttctaagtagagctactcaggttttccgtgaagaa
taccttctcaaacaagaccttgccaaggaggaaatccagagacgagttaaactgttgatt
gttcagaaagaaaaacagctagaagatctacagtattgcaaagaagaaaggaaaagccta
acagagatggctgaacgtctggcagagaagtttgaagaggccaaagagaaacaggaagat
ctcatcaacagattgaaaaggatactgcgttgcttcaacacccagctcccagttttatca
gaaagcgagagagatatgaaaaaagaactgcatgcaacacaggagcagcttcagcagctg
gggaatgccattaaccaggtgaacagaaagatgtcttatcaggagaaacagatggaaaag
ggaaagagccctcggaaatctagtcttacactcagtgattaccaaaagaagaacattaag
gttgtgttaaaggaacacggagaaaacatccaggagatggtgaagcagataaataatgtc
cgaaaccacgtgaacttttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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