KEGG   Xenopus tropicalis (tropical clawed frog): 734002
Entry
734002            CDS       T01011                                 
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X3
  KO
K11647  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    734002 (smarca2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xtr03021]
    734002 (smarca2)
   03036 Chromosome and associated proteins [BR:xtr03036]
    734002 (smarca2)
Transcription machinery [BR:xtr03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     734002 (smarca2)
Chromosome and associated proteins [BR:xtr03036]
 Eukaryotic type
  Histone modification proteins
   HDAC complexes
    REST complex
     734002 (smarca2)
  Chromatin remodeling factors
   BAF complex
    734002 (smarca2)
   PBAF complex
    734002 (smarca2)
   GBAF(ncBAF) complex
    734002 (smarca2)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C SnAC Bromodomain HSA BRK QLQ ResIII HDA2-3 DEAD
Other DBs
NCBI-GeneID: 734002
NCBI-ProteinID: XP_002941055
Xenbase: XB-GENE-1013843
UniProt: F6SIZ3
Position
1:complement(128188473..128299637)
AA seq 1588 aa
MATPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGLSPGSVHSMMGPSPGPPSVTHQLSNM
GSSDYAPESIHQMHKQPMDNMHEKGISDDLHCGTLKSSSMRPPHTGMGPPQSPMDQHSQG
YMSPHPSPLGAPEHVSSPISSGGGPTPPQIPPAQPGLMIQGEPQVMSQPTRGPSAFSQVQ
LHQLRAQILAYKMLARGQPLSENLQLAVQGKRTLPAVQQQQQQQQQQQQQQQQQQSQQQP
SATYSRPPSMAMHAMPVPPAGAGPAPGITGHVAGMMQKPWGEAGQSSDLNVPNAQQKLVV
PPPSGRPSPAPQTAPPSVSLPGPSVPQPTPGQPAPIQLQQKQNRISPIQKPQGLDPVEIL
QEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRD
TTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFK
EYHRSVTGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKD
RRLAYLLQQTDEYVANLTSLVWEHKKAQAAKEKKKKKKKKKAEENAEGVGSGLGMDGELI
DESSQMSDLPVKVIHTETGKVLLAPEAPKASQLETWLEMNPGYEVAPRSDSEGSSSEYEE
EEDEEESSRLDTEEKKRLGLNTEDNVKHDAKQIIETAKQDVDDEYSMQEDARQSQSYYGV
AHAVTERVEKQSSLLINGSLKHYQIQGLEWMVSLFNNNLNGILADEMGLGKTIQTIALIT
YLMEHKRLNGPYLIIVPLSTLSNWLYEFDKWAPSVVKIAYKGTPAMRRSLVPQLRTGKFN
VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPL
QNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRP
FLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKT
LMNTIMQLRKICNHPFIFQHIEESFAEHLGYSNGIINGPDLYRTSGKFELLDRILPKLRA
TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRASLLKRFNEEGSPFFIFLL
STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKI
LAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNEEEDEVPDDETLNQMIA
RHEEEFELFMRMDLDRRREDARNPNRKPRLMEEDDLPSWIIKDDAEVERLTCEEEEEKIF
GRGSRQRRDVDYSDALTDKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDVVKEDGEKT
KKRRGRPPAEKLSPNPPKLTKQMNAVVDTVINYKDSNGRQLSEVFIQLPSRKELPEYYEL
IRKPVDFKKIKERIRNHKYRSISDLEKDIMLLCHNAQTFNLEGSQIYEDSIVLQSVFRSA
RQKIVKEDESEEESNDEEDDDEDDESESESKSVKVKIKLSKKDDKTREKGKGKKRQSRGK
AKPVVSDYDSEEDQEDNEPSEGSGSDDE
NT seq 4767 nt   +upstreamnt  +downstreamnt
atggctacgccaacagatccgggtgcaatgcctcacccagggccttcaccagggccagga
ccatctcctggtcctattctgggtcctagtccaggtccaggcctgtctccaggatcagtg
cacagcatgatggggccaagtccaggcccacctagtgttacccaccagctctccaacatg
ggctcatcagattatgcaccagagagtatacatcagatgcacaagcaaccaatggataac
atgcatgaaaaaggaataagtgatgatttgcactgtggaaccctaaaaagttcaagcatg
agacctcctcacacaggaatgggaccccctcagagccctatggatcagcacagtcaaggg
tatatgtctccacatccttcccccttgggagcacctgaacatgtgtccagtccaatatca
tcaggaggtggaccaacaccaccacagattccaccagctcaaccaggactaatgattcag
ggagagccccaagttatgagccagcctactcgcgggccctcagcttttagccaggttcag
cttcatcaactacgagctcaaattttagcttataaaatgttggcgagaggacagccttta
tctgaaaatctgcagcttgcggtacagggaaagagaactcttcctgctgttcaacaacaa
caacaacaacagcagcagcaacagcagcagcagcaacaacagcaatcccaacaacaaccc
tctgctacttacagcaggccacctagtatggcaatgcatgcaatgcctgtcccccctgct
ggggcagggccagcccccggaattacaggccatgttgctggcatgatgcagaagccttgg
ggagaagcaggacaaagttcagatctgaatgttccgaatgctcagcagaaacttgtggta
ccaccacctagtggacgaccttctccagcaccccaaacagctccaccctctgtttcttta
cctggaccttctgtaccccaaccaactcctggacagcctgctccaattcagcttcagcaa
aaacagaaccgtattagcccaatccaaaaacctcagggcttggatcccgttgaaatacta
caagaacgagaatacaggcttcaagctcgcattgctcataggatccaagagctggaaaac
ttgcctggttctctgccacctgatcttcgtacgaaagctacagtggagttaaaagcactc
cggcttctgaattttcagcggcagctaagacaggaagtggtggcatgcatgaggcgggat
accacccttgagacagcactgaattctaaagcatacaaacgaagcaagagacagacttta
cgcgaggcccgcatgactgaaaagcttgagaagcagcaaaagattgagcaggaaagaaaa
agaaggcaaaaacatcaggaatatttgaacagtatattgcaacatgctaaggactttaaa
gaatatcatcgatcagtcacaggcaagattcagaaactctccaaagcagttgccacatgg
catgccaatacagagcgggagcagaagaaagaaactgagcgcattgaaaaggaaagaatg
agaaggcttatggcagaagatgaggaaggttaccgaaagctgattgaccagaagaaagat
cgccgtctagcctaccttttgcagcaaactgatgagtatgtggctaacctgaccagtttg
gtgtgggagcacaagaaagcacaagctgccaaggagaaaaagaagaagaagaaaaagaag
aaggcagaggagaatgctgaaggagtaggctcaggcttaggaatggatggagagcttata
gatgagagcagccaaatgagtgatctgcctgtcaaggttattcacacggaaacaggaaaa
gtacttcttgctcctgaagcccccaaagcaagtcagcttgaaacatggttggagatgaat
ccaggatatgaagttgctccaaggtctgacagtgaaggaagtagctcagagtatgaagag
gaggaggatgaagaagaatctagtagactggacacagaggaaaagaaacgccttggtctt
aacacggaggacaatgtaaagcacgacgcgaagcagataatagagacagcaaagcaggat
gtagatgacgagtatagtatgcaagaggatgcccgtcaatctcagtcctactacggagtg
gctcacgctgtcacagaaagggttgaaaagcagtcctccctcctaattaatggcagctta
aaacactaccagattcagggtttggaatggatggtttccttgttcaacaacaatttaaat
ggaatcctggcagatgaaatggggctcggaaagaccattcaaactattgcactcataacc
tatctgatggagcacaaaaggcttaatgggccataccttattatagttcctctttcgact
ttgtccaactggctatatgaatttgataaatgggccccatcagttgtgaaaatcgcatac
aagggaacaccagcaatgagacgttctttagttcctcagctaagaactgggaagtttaat
gttctgctaaccacttacgaatatattataaaagacaagcacatactggcaaagatccga
tggaaatatatgattgttgatgaagggcatcgaatgaagaaccatcactgcaaactaaca
caggtgttgaacactcactatgttgccccaagacgtattctactgactggcactcctctg
cagaacaagctgccagagctctgggctcttctgaactttctactgcctactatctttaag
agttgcagcacctttgagcagtggtttaatgctccatttgcaatgacaggagaaagggtg
gatttaaatgaagaggaaaccatactgattatccgacgtttacacaaagttttgcgccct
ttcttgctacgaagattgaagaaagaggtggaatctcagttacctgaaaaggttgagtat
gtgattaaatgtgatatgtcagctctacaaaagattctgtatcgtcatatgcaagccaag
gggatccttcttacagacggctcggagaaagataagaagggtaaaggaggagcgaaaact
ctcatgaacaccattatgcagttaagaaaaatatgcaaccaccccttcattttccagcat
attgaggaatcttttgctgaacatctgggatattctaatggcattatcaatgggcctgat
ctttatagaacctcgggaaagtttgagttacttgatcgaatcctgccaaagctgcgagct
acaaaccacagagtcctgcttttctgtcagatgacatcactcatgactatcatggaagac
tactttgctttccgaaactttctttaccttcgattagatggtacaaccaagtcagaggac
cgtgcttccttactgaaaaggtttaacgaagaaggttctccgttcttcatcttcttgttg
agtaccagagctggaggtcttggactgaaccttcaagctgctgacacagtcgttattttt
gatagtgactggaatcctcaccaggatttacaggcacaggaccgagcccacaggattggc
cagcaaaatgaagttcgcgtgcttcgcttgtgcactgtgaatagcgtggaggaaaaaatt
cttgcagctgccaaatacaagctgaatgtagatcagaaggttatccaagctggcatgttt
gaccagaaatcttcaagccatgaacgtagggcattccttcaagctattctggaacatgaa
gaacaaaacgaggaagaagatgaagttcctgatgatgaaaccctcaatcaaatgatagca
agacatgaagaagaatttgagctttttatgcgaatggatctcgatcgtcgtagagaggat
gctcgcaacccaaaccgtaagccaagactgatggaagaggatgacctgccctcttggatc
ataaaagatgatgctgaagttgagaggttaacctgtgaagaagaggaggaaaaaatattt
ggcagagggtcacgtcagcgcagggatgtggattatagtgatgcactcacagacaagcag
tggctcagagctatcgaagacgggaatttggaggaaatggaagaggaagtacggctgaaa
aaacgcaaaagacgcagaaatgtggacaaagatgttgttaaagaggatggggaaaagaca
aaaaagaggagagggcgaccacctgctgaaaagttatctccaaatccacccaaactaact
aaacagatgaatgctgtagtggatactgttattaactacaaggacagcaacggaaggcaa
cttagtgaagttttcatacagcttccttctaggaaagaactgccagagtattatgaactg
atccgcaaacccgttgacttcaaaaaaataaaggagagaattcgtaatcacaaatacaga
agtattagtgatctagagaaagatatcatgttactgtgtcataatgcacagacattcaat
ttggaaggatcccagatttatgaggattccattgttctacaatcagtcttcaggagtgca
agacaaaaaattgtgaaagaagatgagagtgaggaagaaagcaatgatgaggaagatgat
gatgaagacgatgaatcagaatctgaatcaaagtccgtgaaagtcaaaatcaagctgagc
aagaaggatgacaagaccagagaaaagggaaaaggaaaaaagaggcagagtcgaggcaaa
gccaagcctgttgtgagtgactatgacagtgaagaagatcaagaagacaatgaaccatca
gaaggaagtggaagtgatgacgaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   XENBASE (1)   
Protein sequence (8)   
   UniProt (1)   
   RefSeq(pep) (7)   
DNA sequence (13)   
   RefSeq(nuc) (7)   
   GenBank (3)   
   EMBL (3)   
Protein domain (10)   
   Pfam (10)   
All databases (41)   

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