KEGG   Yersinia rochesterensis: CH54_1291
Entry
CH54_1291         CDS       T03609                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ykr  Yersinia rochesterensis
Pathway
ykr03030  DNA replication
ykr03410  Base excision repair
ykr03420  Nucleotide excision repair
ykr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ykr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CH54_1291 (ligA)
   03410 Base excision repair
    CH54_1291 (ligA)
   03420 Nucleotide excision repair
    CH54_1291 (ligA)
   03430 Mismatch repair
    CH54_1291 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ykr03032]
    CH54_1291 (ligA)
   03400 DNA repair and recombination proteins [BR:ykr03400]
    CH54_1291 (ligA)
Enzymes [BR:ykr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CH54_1291 (ligA)
DNA replication proteins [BR:ykr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CH54_1291 (ligA)
DNA repair and recombination proteins [BR:ykr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CH54_1291 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CH54_1291 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CH54_1291 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CH54_1291 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH RNA_ligase RUBY_RBDX BRCT_2
Other DBs
NCBI-ProteinID: AJJ36598
Position
complement(1392575..1394587)
AA seq 670 aa
MESIIQQINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPTQ
RVGAAPLDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKSAEPLTFCCELKLDGLA
VSLLYEEGELVQAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVFMPQAG
FEQLNDEARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHI
QRLMQFKAWGLPVSNRVKLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDSLDLQEQL
GFVARAPRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITFPEHCPVCGSDIERVEG
EAVARCTGGLFCAAQRKEALKHFVSRRALDVEGMGDKIIEQLVEKQYVENPADLFTLTAG
KLTGLDRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLANLRA
ADIEALKSVPDVGEIVAKHVRNFLGEEHNQKVIEALEKVISWPEPQPIIAEEIDSPFAGK
TVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIKVID
EAEMILLLGE
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggaatcgataattcagcaaattaatcaactaagaacctcattgcgccatcacgagcat
caatatcatgtgctggatgcgccagagatccctgatgctgaatacgaccggttgatgcag
caattacgcgatttggaagcacaacatcccgaactgattaccaatgactcaccgactcaa
cgggtaggcgccgcgcctcttgatgcattcgagcaggttaaacatgaagtcccgatgctg
tctctggataatgtctttgatgaagagagttatctggcttttgataaaagggtgcatgac
cggctgaaaagcgcggaaccgctgacattttgctgtgaattgaagcttgatggtttagcg
gtgagtttgttgtatgaagagggtgaactggtacaggccgcaacccgaggtgatggcacc
accggtgaaaatatcactgccaatgtgcgcactatccgggctattccgctgcgtttacaa
ggggataatatcccgcgtcgggttgaagttcgtggcgaagtctttatgccacaggccggt
ttcgagcaactgaatgacgaggcgcgccgcaaagggggcaaaatttttgctaacccgcgt
aatgcggctgctggctcactgcgccagcttgacccgcgtattaccgctaaacggccatta
accttcttctgctatggcgtgggtttattggagggcggtgaacttccccgcagtcatatt
cagcgcctaatgcagtttaaagcttggggcttaccggtcagtaatcgggtcaaactgtgc
actggcagcgagcaagtcattgctttctatcgtcaagttgaacaagaccgcgccggttta
ggttttgatattgatggtgtggtcatcaaagttgattcactcgacttgcaagagcagttg
ggtttcgtggcacgcgcaccgcgctgggcgacggcatttaaattcccggcacaagaacag
ataactcaagtccgtgaagtagaatttcaggtggggcgcaccggtgcgattaccccggta
gcccggctggaacctgtacaagtggcgggcgtgattgtcagcaatgccactctgcataat
gccgatgaaatcgagcgcttgggtttacgcattggcgataccgtaattgtccgccgtgcc
ggagatgttattccgcaggtggtgggcgtagtgatggagcagcgcccgcaggatgctaaa
gagattactttccctgaacactgcccagtgtgcggctctgatattgagcgggttgagggc
gaagcggtcgctcgctgtactggtgggttattctgcgccgcgcaacgcaaagaggcattg
aagcattttgtttcgcgccgggcgctggatgtcgaaggtatgggtgacaagattatcgag
caactggtggaaaaacagtatgttgagaatcctgctgatttattcacactgactgcgggc
aagctgaccgggttggaccggatggggccgaagtccgcacaaaatctgatagcggcgcta
gaaaaagcgaaacaaaccacttttgcccgctttttgtatgctttgggcattcgtgaggtg
ggggaggcgacagcggctaacttagcggctcacttccgtaatctggcaaatctgcgtgcg
gcagatattgaagcattaaaaagtgtgccggatgtgggggaaatagtggccaaacatgtg
cggaatttcctcggtgaagaacacaatcagaaagtgatcgaagcgctggaaaaagtgatc
agttggccggagcctcaaccaattattgccgaagagatcgacagcccatttgccggaaaa
accgtggtgctcactggctcgctgaccattctctcacgtgacgaagcaaaagatcgcctg
actgctttaggggcaaaagtgagtggcagtgtttccaagaaaacggatctggtgattgcg
ggtgaagctgctggttcaaaattggtgaaggcgcaggaactggggattaaggttatcgat
gaagcagaaatgatccttttgcttggtgaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (30)   

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