KEGG   Yersinia pestis Harbin 35 (biovar Medievalis): YPC_3912
Entry
YPC_3912          CDS       T01874                                 
Symbol
tolC
Name
(GenBank) transport channel
  KO
K12340  outer membrane protein
Organism
yph  Yersinia pestis Harbin 35 (biovar Medievalis)
Pathway
yph01501  beta-Lactam resistance
yph01503  Cationic antimicrobial peptide (CAMP) resistance
yph02020  Two-component system
yph03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:yph00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    YPC_3912 (tolC)
  09132 Signal transduction
   02020 Two-component system
    YPC_3912 (tolC)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    YPC_3912 (tolC)
   01503 Cationic antimicrobial peptide (CAMP) resistance
    YPC_3912 (tolC)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:yph02000]
    YPC_3912 (tolC)
   02044 Secretion system [BR:yph02044]
    YPC_3912 (tolC)
   01504 Antimicrobial resistance genes [BR:yph01504]
    YPC_3912 (tolC)
Transporters [BR:yph02000]
 Other transporters
  Pores ion channels [TC:1]
   YPC_3912 (tolC)
Secretion system [BR:yph02044]
 Type I secretion system
  alpha-Hemolysin/cyclolysin transporter
   YPC_3912 (tolC)
  RTX toxin transporter
   YPC_3912 (tolC)
  Multiple protein transporter
   YPC_3912 (tolC)
  RaxAB-RaxC type I secretion system protein
   YPC_3912 (tolC)
Antimicrobial resistance genes [BR:yph01504]
 Gene sets
  Multipdrug resistance modules
   Multidrug resistance, efflux pump AcrEF-TolC [MD:M00696]
    YPC_3912 (tolC)
   Multidrug resistance, efflux pump MdtEF-TolC [MD:M00697]
    YPC_3912 (tolC)
SSDB
Motif
Pfam: OEP Ribosomal_S5_C
Other DBs
NCBI-ProteinID: ADW00347
Position
3763937..3765334
AA seq 465 aa
MKKLLPLLIGLSLAGFSTMSQAENLLQVYKQARDSNPDLRKAAADRDAAYEKINEVRSPL
LPQLGLSAGYTHANGFRDASNSPDSNATSGSLKLTQTIFDMSKWRALTLQEKAAGIQDVT
FQTSEQQLILNTATAYFNVLRAIDSLSYTEAQKQSVYRQLDQTTQRFNVGLVAITDVQNA
RASYDTVLAAEVAARNNLDNALESLRQITGVYYPELASLNVERLKTQRPDAVNNLLKEAE
KRNLSLLSARLSQDLAREQIKSAETGYMPTVDLTASSSITNTRYSGGTPSSQQVNNDSGQ
NQIGVQFSLPLYSGGATNSAVKQAQYNFVGASELLESAHRNMVQTLRSSFNNISASISSI
NAYQQVVISNQSSLDAMEAGYQVGTRTILDVLTATTNLYQSKQQLADARYNYLINQLNIK
SALGTLNMNDLMALNAVLDKPVPTSAAALAPENTTRQTVTTPRAQ
NT seq 1398 nt   +upstreamnt  +downstreamnt
atgaagaaactgctcccccttcttatcgggctgagtctggctggtttcagcaccatgagc
caggcagagaacttgctgcaagtttataagcaagccagggatagtaacccggatttacgt
aaagccgctgctgatcgcgatgccgcatatgaaaaaatcaatgaagtacgcagtccactg
ttgccacaacttggtttaagtgccggctatacacatgctaatggatttcgtgacgcgtct
aacagcccagatagcaatgccacatcaggctctctaaaactgacccagacaatttttgac
atgtctaaatggcgcgccctgaccttacaggaaaaagcggctgggattcaggatgtgaca
ttccagaccagcgaacagcaactgattcttaacactgcaacggcttatttcaacgtactc
agagcgattgacagcctctcttatactgaagcgcagaaacaatcggtctatcgtcagttg
gatcaaacaactcaacgttttaatgtgggtttagtggccattactgatgtgcagaacgcc
cgagccagctacgataccgtgttagcggcagaagtggccgcccgtaataatctggataac
gcactagagagcttgcgccagattactggtgtttattatcccgaattggcgtcgttgaat
gtagaacgattgaagactcaacgcccagatgcggttaataacctattgaaagaagctgaa
aaacgtaacctttctttgctttctgcccgtttgagccaagacttggcacgtgagcaaatt
aagtctgcggaaacgggctatatgccaaccgtcgatttgaccgcctcatcttcgataacc
aatacccgttacagtggcggaacccccagttctcaacaggtaaataatgattccggccag
aaccaaattggcgtgcaatttagcttaccgctgtacagcggtggtgccaccaattctgcg
gtgaaacaagcgcagtataatttcgttggtgccagtgagttgttggaaagtgcacatcgc
aatatggtgcaaacgcttcgctcatcatttaataatatttcagcctcgatcagcagcatc
aatgcttaccagcaagtggttatttctaaccaaagctctttggatgcaatggaagctggc
tatcaggtaggcacccgtaccattctggatgttttgactgcaacgactaacctgtatcag
tccaaacaacaattggctgatgctcgttataactatttaatcaatcagttaaatatcaag
tcggcactggggacgttgaatatgaacgacctgatggcactaaacgccgtattggataaa
ccggtcccgacgtcagcggctgctctggcaccagagaatactactcgccaaactgtcact
acaccacgcgctcagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (7)   
   KEGG PATHWAY (4)   
   KEGG MODULE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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