KEGG T00505: YPDSF

Yersinia pestis Pestoides F (biovar Antiqua): YPDSF_3489

Entry

YPDSF_3489        CDS       T00505

Name

(GenBank) ATP-dependent DNA helicase Rep

K03656

ATP-dependent DNA helicase Rep [EC:5.6.2.4]

Organism

ypp Yersinia pestis Pestoides F (biovar Antiqua)

Brite

KEGG Orthology (KO) [BR:ypp00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ypp03400]
    YPDSF_3489
Enzymes [BR:ypp01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     YPDSF_3489
DNA repair and recombination proteins [BR:ypp03400]
Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    YPDSF_3489

SSDB

Motif

Pfam:

UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 Viral_helicase1 PhoH AAA_11 ResIII

Other DBs

NCBI-ProteinID:

ABP41842

Position

complement(4002966..4004987)

AA seq 673 aa
MRLNPSQQEAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAA
REMKERVAQTLGRKEARGLMIATFHTLGLEIIKKEYVALGMKSNFSLFDAQDQMGLLKDL
THKWLEDDKTLLQQLVSAISNWKNDLLDPAAAAATARSERDKLFVHCYGLYDAHLKACNV
LDFDDLISLPTLLLQKNLEVRERWQNRLRYLLVDEYQDTNTSQYQMVKLLVGNRARFTVV
GDDDQSIYSWRGARPQNLVLLNEDFPALRVIKLEQNYRSSGRILKAANILIANNPHVFEK
KLFSELSYGDELKVITANNEDHEAERVVGELIAHHFVKKTQYSDYAILYRGNHQSRLFEK
LLMQNRIPYRISGGDSFFSRPEIKDLLAYLRVLTNQDDDSAFLRIVNTPKREIGAATVQK
LGEWANLRNKSLFRASFDLGLGEHLKGRGLESLQRFTHWMDGIIRLVEREPVAAVRDLIH
GIDYESWLFETAPSPKAAEMRMKNVNLLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMM
ERGESDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSIDEDNVDEERRLAYVGI
TRAQRELFFTLCKERRQYGELIRPEPSRFLMELPQDDLNWENERKAVSPEERMQKGQSHL
ANLRAQLANAKKP

NT seq 2022 nt +upstreamnt +downstreamnt
atgcgattaaaccccagccaacaagaagccgtcgaatttgtcactggaccctgtctggtg
ctggccggtgcgggatcgggtaaaacccgagtcattaccaacaagattgcccacctgatc
cgtcagtgtggttatcagcctaagcatattgctgccgtgaccttcaccaataaagcagcc
cgcgagatgaaagagcgtgttgctcaaacgctggggcgcaaagaagcgcggggattgatg
atcgcgactttccacaccttggggttggaaatcatcaagaaagagtatgtggctctgggg
atgaagtcgaacttctcactgttcgatgcacaggatcaaatggggttattgaaagatctg
acccataagtggctggaagatgacaaaacattgctgcagcaactggtgtcggcgatctcc
aattggaagaatgatctgctggatccagccgccgctgctgcgacagcacgatccgagcgt
gataagttatttgtccattgctacggcttatatgacgcccatttgaaagcctgtaatgtg
ctggattttgacgaccttatctcgctacccaccctattgttgcaaaaaaatctggaggtc
cgtgagcggtggcaaaaccgtctgcgttacctgctggttgatgaatatcaggataccaat
accagccagtatcaaatggtgaaattgctggtggggaatcgggcgcgttttactgtcgtg
ggtgatgacgaccaatctatctattcatggcgtggtgctcggccacagaacttggtcctg
ctaaatgaagatttccctgcgctacgggtgattaagctggaacagaattaccgttcttcg
gggcgtatcttgaaggcggcgaatattttgattgccaacaacccacatgtttttgaaaag
aaacttttttctgaactgagctatggcgatgagttgaaagtgattaccgccaataacgaa
gatcatgaagcggagcgggtggtcggcgagcttattgcacatcactttgttaaaaagacc
caatatagcgattacgccattttgtatcgtgggaatcaccaatcgcggttgtttgaaaaa
ttgctgatgcaaaaccgtattccttatcgaatttcgggtggcgattcatttttctctcgt
ccagagattaaggatttgttggcttacctacgggtattgaccaatcaggatgatgacagt
gcattcttacgaattgtgaatacaccaaagcgtgagattggtgcggccaccgtccaaaaa
ttgggtgaatgggctaatttacgcaataagagcctgtttcgggccagttttgatttaggg
ttaggcgagcacctgaagggccgtggcctggagtcattgcaacgttttactcactggatg
gatgggattattcgtttggttgagcgtgaacccgtggcagcagtccgggatttgatccac
ggtattgattacgaaagttggttattcgaaactgcgcccagcccaaaagccgctgaaatg
cgtatgaaaaacgttaatttattattcagttggatgaccgaaatgctggaagggtcggaa
ctggatgaaccgatgacgctgactcaggtggtaacgcgttttaccctgcgtgacatgatg
gagcgaggggagagtgatgaagaactggatcaagtgcaattaatgacgttgcatgcctct
aaagggctggagttcccttatgtattcttagtggggatggaagaggggttgctgccgcat
caaagcagcattgatgaagataatgtggatgaagaacggcggttggcttatgtggggatc
acccgcgcccagcgtgaactgttcttcaccctgtgtaaagaacggcggcaatacggcgag
ttgattcggccagaacctagccgttttctgatggagttgccgcaggacgatttaaactgg
gaaaacgaacgtaaagccgtcagcccggaagagcgtatgcaaaaaggccagagtcatctg
gccaatcttcgtgctcagttagcgaatgcgaagaaaccgtag

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (17)   

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