KEGG   Yersinia pseudotuberculosis ATCC 6904: DJ40_1832
Entry
DJ40_1832         CDS       T03307                                 
Symbol
hsdR
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family protein
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
ypq  Yersinia pseudotuberculosis ATCC 6904
Brite
KEGG Orthology (KO) [BR:ypq00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:ypq02048]
    DJ40_1832 (hsdR)
Enzymes [BR:ypq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     DJ40_1832 (hsdR)
Prokaryotic defense system [BR:ypq02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   DJ40_1832 (hsdR)
SSDB
Motif
Pfam: SWI2_SNF2 EcoR124_C ResIII HSDR_N DEAD DUF5901
Other DBs
NCBI-ProteinID: AIN13316
Position
2033033..2036260
AA seq 1075 aa
MTTFKTEAQFEQAFIEVLTNKGWEQKILKNKTEADLLRNWASILFENNRQRDRLNDVPLT
VTEMQQIIEQIKELKTPLKLNGLINGKTVAIKRDNPADTLHMGKEVSLKIYDRQEIAAGQ
SRYQIVQQPKFERGSPLRNDRRGDVLLLINGMPVIHVELKRSGIPVSQAVNQIEKYSKEG
VFSGLFSLIQVFVAMEPNEAKYFANPGLDSRFNPDYQFNWADFNNEPMNHWKDIASTLLS
IPMAHQLIGFYTVADDTDGVLKVMRSYQYYAANAISDKVAKTNWQQLGSAANNPDRLGGY
VWHTTGSGKTMTSFKSAQLIAQSKDADKVIFLMDRIELGTQSLAEYRNFAGDGEDVQATE
NTHVLITKLKSTAPADTLIVSSIQKMSNIFEEVDDEGTATNSADIEKIRAKRLVFIVDEA
HRSTFGDMLIIIKRTFPRALFFGFTGTPIQEENEKNGNTTSTVFGNELHRYSIADGIRDG
NVLGFDPYKVCTFKDKDLRQAVALEQAKADSVADAMSTAAKKKKFNYFMNDVPMAGHKDA
TGKYVKGIEDYVPKEQYLTEAHQEKVVEDILAEWDVLSQANKFHAILATSSIAEAIDYYR
RLKAAKPELKVSALFDPNIDNDGSGDRDPTFKGDALDEIMADYNARYGQDFDFARHAAFK
KDLAARLAHKKPYERIHTEPSKQLDILIVVDQMLTGFDSKWLNTLYLDKVIKYQNIIQAF
SRTNRLFGPDKPHGIIRYYRYPHTMEQYINDAVKLYSGDRPIGLFVDKLESNLKAMNELV
ADITELFVSAGVENFEKLPDDIETCAQFAKLFNTFSQHLEAAKVQGLHWEQSIYSPTEND
VEHEVTLAIDEQTYLSLVLRYKELVAKGDGGGSGGGDVPFDISGYLTEIDTGKIDADYMN
SRFDKFLKELNQHQAPASIETTLNELHKSFASLTQSEQKYAKLFLHDLQRGDAQLIEGHT
FRDYINTYKDNAENAQLNAVVNALGLDKERLIALMADSVNDKNLNDFGRFDALKDSVNKS
KAKIYFEKQDGVIIPPFKLNIRIDQFLKQFILAQTDDFLSDRDVVGDVMDIPPSA
NT seq 3228 nt   +upstreamnt  +downstreamnt
atgaccacctttaaaaccgaagcgcaatttgagcaggcctttattgaggttctcaccaac
aaaggttgggaacagaagatactcaaaaacaaaaccgaggcggatttactgcgaaattgg
gcgtccattttgtttgaaaataatcgccagcgtgaccgtttaaatgatgtcccattaacc
gtgacggaaatgcagcaaattattgagcaaatcaaagaacttaaaaccccgctcaagctc
aacggtttaattaacggtaaaaccgtggccattaagcgcgataacccagccgataccttg
catatgggcaaagaagtcagcttaaaaatatacgatcgccaagaaatcgccgctggccaa
agccgttaccaaattgtgcagcaacccaaatttgaacgcggcagccctttgcgcaacgat
agacgcggtgatgtgctgctactaattaacggtatgccggtaattcatgtcgagcttaag
cgcagtggcattccggttagccaagccgtaaaccaaattgaaaagtacagcaaagaaggc
gtatttagcggcctgttttcgctcatccaagtgtttgtggccatggagccaaacgaggcc
aaatactttgccaaccccgggctagacagcagatttaaccccgattatcaatttaactgg
gccgattttaataacgaacccatgaaccactggaaagacatcgcttctaccttactttct
atccctatggcgcaccagttgattggcttttataccgtcgccgacgataccgacggcgtg
cttaaggtgatgcgcagttatcagtattacgccgccaatgcgatatctgacaaagtggcc
aaaaccaactggcagcaactgggtagcgcggccaataaccctgaccgcctcggtggttat
gtgtggcataccaccggttcgggtaaaaccatgaccagctttaaatcggcgcagttgatt
gcacaatcgaaagatgccgataaagtgatttttttaatggacaggattgagctgggcacc
cagtcgctcgcggaatatcgcaattttgctggcgatggcgaagacgttcaagccaccgaa
aatactcatgtgctcattaccaaattaaaaagcaccgctcccgccgatacgttaattgtt
agctctattcaaaaaatgagtaatatttttgaagaagttgatgatgagggaacagcaaca
aattcagctgacatagaaaaaattcgcgctaagcgtttggtatttattgtcgatgaggcg
caccgctctacctttggcgacatgctgattattattaaacgaacctttccgcgcgccttg
ttttttggctttaccggcacaccgattcaagaagaaaacgaaaaaaacggcaatactacc
agtaccgtatttggcaacgagctacaccgctacagcattgccgacggtattcgcgacggc
aatgtgctgggctttgacccttacaaagtctgtacctttaaagataaagatctacgccag
gccgtcgcccttgaacaggctaaggccgattcggttgcagatgcaatgtctacggcagcc
aaaaagaaaaaatttaattattttatgaatgatgtgccaatggctggtcataaagatgca
acaggtaagtatgtcaaaggcatagaagattatgtgccaaaagagcaatatctcactgaa
gcccatcaagaaaaagtagtagaagatattctggcagagtgggatgtgctcagccaggcc
aataagtttcacgctattttggccactagcagcattgccgaagccattgactattaccgc
cgtttaaaagccgccaaacctgaacttaaagtatcggccctatttgacccaaatattgat
aacgacggcagtggcgaccgagaccccacctttaaaggcgatgctctggacgaaattatg
gccgactataatgcgcgttatggccaggattttgattttgcccgccacgcggcctttaaa
aaagatttagcggcacgacttgcccataaaaagccttacgagcgcatccataccgagcct
tcgaagcaattagatatactgattgtagtggatcaaatgctcactggctttgactctaaa
tggctcaataccttgtatttagacaaggtgattaaataccaaaatattattcaagcgttc
tcgcgcaccaatcgcttgtttggccccgacaaaccccacggtatcatccgttattatcgt
tatccacacaccatggagcagtacattaacgatgcggtaaaactctattccggcgacaga
cctatcggcttatttgttgacaagttagaaagcaaccttaaagccatgaatgaattagtc
gcggacattaccgagctattcgtcagtgcgggtgttgagaactttgaaaaactgccagac
gatatagaaacctgtgcccaattcgccaaattatttaacacctttagccaacacctggaa
gcggctaaagtacaaggtttgcattgggagcagtcgatctattcccctactgaaaatgat
gtagaacatgaggtaacgctggctatagacgaacaaacttacctgagcctggttctgcgt
tacaaagagttagtcgccaaaggtgatggtggtggctcaggtggcggcgatgtgcctttt
gatatcagtggttatttaactgaaatagataccggcaaaatcgatgccgactatatgaac
agccgctttgataaatttttaaaagagctgaaccaacaccaagcccctgcgagcattgaa
accacattaaatgagctacacaagtcgtttgcatcgctcacccaaagcgagcaaaagtac
gccaagctcttcttgcacgacttgcagcgcggcgatgcgcagttaattgaaggccatact
tttagagactatatcaacacctacaaagataatgctgaaaatgcgcaattaaacgccgtt
gttaatgctcttggtttagataaagaacggctcatagcattaatggctgatagtgttaat
gataaaaatctcaatgattttggtcgcttcgacgcattaaaagattcggtaaataaatcg
aaagccaagatctattttgaaaaacaagacggcgtaatcatacctccatttaaattgaat
atacgtattgatcagtttttaaagcagtttattttggcacaaacggatgatttcttaagt
gacagagatgttgttggtgatgtgatggacatccctccctcagcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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