KEGG   Anoplopoma fimbria (sablefish): 129090064
Entry
129090064         CDS       T09102                                 
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04010  MAPK signaling pathway
afb04020  Calcium signaling pathway
afb04510  Focal adhesion
afb04518  Integrin signaling
afb04519  Cadherin signaling
afb04540  Gap junction
afb04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:afb00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    129090064 (pdgfrb)
   04020 Calcium signaling pathway
    129090064 (pdgfrb)
  09133 Signaling molecules and interaction
   04518 Integrin signaling
    129090064 (pdgfrb)
   04519 Cadherin signaling
    129090064 (pdgfrb)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    129090064 (pdgfrb)
   04540 Gap junction
    129090064 (pdgfrb)
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    129090064 (pdgfrb)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:afb01001]
    129090064 (pdgfrb)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:afb04090]
    129090064 (pdgfrb)
Enzymes [BR:afb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     129090064 (pdgfrb)
Protein kinases [BR:afb01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   129090064 (pdgfrb)
CD molecules [BR:afb04090]
 Proteins
  129090064 (pdgfrb)
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Ig_PDGFR_d4 Pkinase Ig_3 I-set Ig_2 VEGFR1-3_N_Ig-like ig Ig_VEGFR-1-like_5th V-set Adeno_E3_CR1 C2-set_2 RIFIN Beta-prop_CGLA AMP-binding_C_2 VEGFR-1-like_Ig-like LRRC37AB_C Adeno_E3_CR2
Other DBs
NCBI-GeneID: 129090064
NCBI-ProteinID: XP_054453534
Position
4:complement(12160344..12185911)
AA seq 1104 aa
MRGVTASTLHLTVTVTAALLYFCTELRCLEITPDDRELVLAEGSSLTLTCSGSEDTRWEF
KRDDVPYFQVEQVQSDGQSYQIVQSSVTSSVLTLRNVSWKHTGVYQCTDRHTEETKDVAV
FVPDPDVWFIESSHGMVTKTSEESTIPCVITNPNINVTLYERDTDLPVRGLYVPSEGYKA
SLEDRTYVCRGELNDEVKESQAFYVFSIVVPEAIDAYINASQTILKQGEPLTVNCTVHGV
ELVFFSWDIPNREVVKVDPLTEFLPVMYMRSCLIFPQATVAHSGNYVCHVHESIQDQKAS
ASINITVLERGFVDVKDAQQKNISAKLQENVELRVEVEAYPPPQVRWSKDGAYIKGDKTI
TTRREDEIRYVTMLTLVRVRKEQKGRYTVLVTNGDDTEEVTFDLEVQVPSQIKDLTDHHL
PGKRHLVTCVAEGVPTPTIQWYSCDSMHQCSNQTTVWQPLIPDPELLSIRTNVSYSETRK
TSQVRSQVTFHKPQQVTVRCETSNQAGLIDRRDVKLVSSTLYSQVAVLAAVLALVVIIII
SIIILIAVWRKKPRYEIRWKVIESVSQDGHEYIYVDPIHLPYDLAWEMPRDNLVLGRTLG
SGAFGRVVEATAYGLTHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNL
LGACTKHGPLYLVTEYCRYGDLVDYLHRNKHTLLQYQAEKNQDDGCLISGRSTPLSQRKG
YVSFGSESDGGYMDMSKDEPTIYVPMQEQMDTIKYADIQPSPYESPYQQDIYQEQDGSRS
DLAISDSSILTYDDLLGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLA
RDIMHDSNYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTMGGTPYPDLP
MNELFYSALKRGYRMAKPAHASEEVYDIMKKCWDEKFEKRPDFSFLVHSVGNMLADSYKK
KYSQVNDNFLKSDHPAVARTKPRLSSPFPIANPAFGTPSPHYIPPDPYNHSPSPGEFRQE
ADTQEVMTSYNEYIIPIPDPKPEDVFTDAPSESPASSLALEEETDSMSQDTADTLPEEDR
LEETSERDALLGFSGTPEVEDSFL
NT seq 3315 nt   +upstreamnt  +downstreamnt
atgagaggcgtgacggcatccacgctccatctgacagtaacagtaacagcagctctcctc
tatttctgcactgagctgcgttgtctggagatcacacccgatgacagagagcttgtcctg
gcagagggctcctctctcaccctcacctgctccggctcagaggacactaggtgggagttc
aagagggatgatgtgccttacttccaagtggaacaagttcagagcgatggccaaagctac
caaattgtgcaaagcagcgtcacatccagtgttttgaccttgaggaacgtgagctggaag
cacacaggggtgtatcagtgcaccgatcgacacactgaagaaactaaggatgtggctgtt
tttgtaccagaccctgatgtgtggttcatagagagctcacacggcatggtaacaaagacc
agtgaggagagcaccatcccctgtgtgatcaccaatcccaacatcaatgtcaccctgtac
gagagggacactgatctgcccgtcagggggctttatgtgcctagtgaggggtacaaggca
tcgctggaggacaggacctatgtgtgtcggggggagctgaacgacgaggttaaagagtct
caggccttctacgtcttcagcattgtcgtccctgaggccatcgacgcctacatcaatgcg
tcacagaccatcctgaaacagggcgaaccgctgacagtaaactgcacagtgcacggagtg
gagctggtgtttttttcctgggatatccccaacagagaggttgttaaggtcgatccactg
acagaattcctacctgtcatgtacatgcgctcctgcctgatcttccctcaggccacggtg
gcccacagcggaaactacgtctgccatgtccacgagagcatccaagaccagaaggcctct
gccagcatcaacatcactgtgctcgagcgaggctttgtggatgtgaaggatgctcagcaa
aaaaacatttcagcaaagctgcaagagaacgtggagttgagagtggaggttgaggcctac
cctccccctcaggtccgctggagcaaagacggcgcctacatcaagggagataaaaccatc
acaaccagaagagaggatgagatcaggtatgtcactatgctcaccttggtgagggtgagg
aaggaacagaaaggccgctacactgtcctcgtcacaaacggagatgacacagaggaagtg
acctttgacctagaggtccaagtcccctctcagattaaagacctgactgaccaccacctc
cctgggaagagacacttggtgacctgtgtagctgagggggtcccaaccccgaccatccag
tggtacagctgtgacagcatgcaccagtgtagcaaccaaacaacggtgtggcagccgctg
ataccagaccccgagctgctgagcatccggaccaatgtcagctacagcgagactcgaaaa
accagccaggtgcggagccaggtgaccttccacaagcctcagcaggtcacagtgcgctgt
gagaccagcaaccaggcaggactcatcgacaggagagacgtcaaactggtgtcaagcaca
ctttactcccaggtggcagtattggctgctgttttagccttagtggtcatcatcatcata
tctatcatcatcctcattgctgtgtggagaaagaagccacgctatgagatcagatggaag
gtgatagagtcagtgagccaggacggtcatgagtacatctatgtggaccccatccacctg
ccctatgacctggcctgggagatgccacgagacaacctggtgctgggtcgcactcttgga
tcaggagcctttggcagggtggtcgaggcaactgcgtatggactcactcattcccagtcc
agcacaaaagtggccgtgaaaatgctgaaatctacagccaggaggagtgagactcaggct
ctgatgtcagagttgaagatcatgagtcacctgggtcctcacctcaacatcgtcaacttg
ctgggagcttgcaccaaacatggccctctgtatctagtgactgagtactgtcgctatggc
gacctggtggactacctgcacaggaacaagcacaccctcctgcagtaccaagcagagaag
aaccaagacgacggctgcctcatctctggaagaagcactccgctcagccagaggaaaggc
tacgtgtccttcggaagtgagagtgatggaggttacatggacatgagtaaagacgagccc
accatctacgtgcccatgcaggagcagatggacaccatcaagtacgcggacatccaaccc
tctccatatgagtcgccctaccagcaggacatctatcaggaacaagatggcagcagatcg
gacctggccatcagtgactcttccattctcacctacgatgatctgttgggcttcagctat
caagtggcaaaggggatggagtttctcgcctccaagaattgtgtccatcgtgacctcgca
gccaggaatgtgctgatctgcgagggcaaactggtgaagatctgtgactttggactggcc
agagacatcatgcatgattccaactacatctctaaaggcagcaccttcttgccgctgaaa
tggatggcaccagaaagtattttccataatttgtacaccaccctgagtgacgtgtggtca
tacggcattcttctttgggagattttcactatgggaggaaccccctaccctgatttgccc
atgaacgagttgttctacagcgctttgaaaagaggctaccgaatggccaaacctgcacat
gcctctgaagaagtttatgacatcatgaagaagtgctgggatgagaagtttgagaaaagg
ccagacttctcctttctggtccacagtgttgggaacatgctggcagacagctacaaaaag
aaatacagccaagtcaacgataacttcctgaagagtgaccacccggcagtcgcccgcacc
aaacccagactctcctccccatttccgatcgccaacccagcattcggcaccccgtccccc
cattacatccccccggacccctacaaccatagcccgagccctggagaattcagacaagag
gcagacacacaggaagtcatgacttcatacaacgaatacatcattcccatccccgacccc
aagccggaggacgttttcactgacgcgccatcagaaagccctgcaagctctctggctctg
gaggaggagaccgactccatgtcgcaggacactgctgacactctcccagaggaggaccgg
ctggaggagaccagtgagagagatgctctgctgggtttctctgggacgcccgaggtagaa
gacagcttcttgtag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (18)   
   Pfam (18)   
All databases (28)   

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