Alteromonas mediterranea U7: I876_09400 Help Entry I876_09400        CDS       T02721                                  Name (GenBank) NAD-dependent DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism amae  Alteromonas mediterranea U7 Pathway amae03030   DNA replication amae03410   Base excision repair amae03420   Nucleotide excision repair amae03430   Mismatch repair Brite KEGG Orthology (KO) [BR:amae00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     I876_09400    03410 Base excision repair     I876_09400    03420 Nucleotide excision repair     I876_09400    03430 Mismatch repair     I876_09400  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:amae03032]     I876_09400    03400 DNA repair and recombination proteins [BR:amae03400]     I876_09400 Enzymes [BR:amae01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      I876_09400 DNA replication proteins [BR:amae03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      I876_09400 DNA repair and recombination proteins [BR:amae03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      I876_09400    NER (nucleotide excision repair)     GGR (global genome repair) factors      I876_09400    MMR (mismatch excision repair)     DNA ligase      I876_09400   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       I876_09400 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH 5_3_exonuc RNA_ligase DZR_2 DUF4796_N Motif Other DBs NCBI-ProteinID:  AGP89741 Position 2129324..2131360 Genome browser AA seq 678 aa AA seqDB search MSDTLEQARKKVAELRNTLNEYNYQYYVLDDPSIPDAVYDRDMQSLIALEKQYPSLQSPN SPSQKVGGEALSAFEQVTHDVPMLSLDNAFDEESLLAYEKRLKDRLKDTSSLHFSCEPKL DGLAVSILYENGELVRAATRGDGQVGENITANVRTISNVPLRLRGDAHPDRVEVRGEVFM PREGFAKLNEHQKNAGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPDNFT LPTTHSERLSQLGKWGLPLCPDIDTAEGGRGCLDYYHHILEKRDNLPYDIDGVVFKVNRI DLQAALGFVARAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVS NATLHNQDEITRLGVKVGDTVVIRRAGDVIPQVVSVVDTKRTGSETDIAFPSQCPVCGSQ VEKLEDEAVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADF FTLSLGDVVGLERMAEKSASKLLSSLEASKQTTLAKFLYALGIREVGEATAANLAAHFET LDAIRDASIEALVEVQDVGEIVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDADNL PLEGKTCVITGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELD VEVWDEAKLIAFLAENEK NT seq 2037 nt NT seq  +upstreamnt  +downstreamnt atgtctgacactttagaacaagctcgaaaaaaagttgccgaactgcgcaacaccttaaac gaatataactaccagtattatgtattggacgatccctcaatacccgacgcggtatacgat agggatatgcagtcacttattgcgcttgaaaaacagtatccttctttacaaagccctaat tccccaagtcaaaaagtggggggggaggcattatcggcatttgagcaagtcacccacgat gtgcctatgctttcgcttgataatgctttcgatgaggaatctcttcttgcttatgaaaag cgtctcaaggatagattaaaagacacatcaagtttgcatttcagttgcgagcctaagtta gatggccttgccgtaagtatcctttatgagaatggtgaacttgttcgtgcggccacacga ggtgatggtcaagtcggtgagaatattacggcgaatgtacgcactatttctaacgtgccg ttaaggttgcgcggagacgctcaccccgatcgcgtagaagttcgcggtgaagtattcatg cctcgcgagggctttgctaagttaaacgaacatcagaaaaacgccggtggtaaggtgttt gccaatccacggaatgccgcagcgggaagtttacgtcagcttgattcaaaaataaccgct aaacgcccgttgatgttttatgcatactcgctaggcgtagtacaacctgataactttacg ctacctaccacccatagcgaacgtctctcacaattaggtaaatgggggctgcccttgtgc cccgatattgatacagctgaaggtgggcgaggctgtctcgattactatcatcatatatta gaaaagcgtgacaacttaccttacgacatagacggcgttgtctttaaagtaaaccgtatt gatttacaggctgcgctagggtttgtagcacgtgcgccaaggtgggcaattgcacaaaag tttcctgcccaagaagaagtgactaaactgcttgatgtagagtttcaggttggccgtacc ggtgcaattacccctgtcgcaaggcttgagcccgtttttgtaggcggtgtaaccgtgtca aatgcgaccttgcacaaccaagatgagattactcgtttaggcgttaaagtgggtgacact gtggttatccgccgtgcaggtgatgttattccgcaggtggtatctgtggttgatacaaaa cgtacaggcagcgaaaccgacatagcttttcccagtcagtgccctgtgtgcggctcacaa gtagaaaagcttgaagatgaggcggttgcccgttgtacgggtgggttaatctgtgcagcg cagcgcaaacaagcgcttaaacattttgcttctcgaaaggcatttgatattgacggttta ggggacaaattggtcgatcagctagttgatgccgatttagttcatagccctgctgacttc tttactctatcacttggtgatgtagttggtttagaacgcatggctgaaaaatcagcgagt aagttgttatcctctttagaggcatctaaacaaactaccttagcgaagtttctatacgca cttggtattcgagaagtaggggaagcgacagcagctaatttagcggcgcactttgaaacc ctcgatgcaattcgcgacgcgtcgatagaggcgctggttgaagtacaggatgtgggcgag atagtagcaacacatatatttaacttctttaatgagtcacacaatactgatgtgattgat gcgttgttaaaagaaggcattaactggcctgcgattgaaaaacctgacgcggataactta ccgcttgagggtaaaacctgtgtgatcaccggaacgcttagcgaaatgggccgctcggat gctaaagcgcgcttacaactcttaggggctaaagtggcgggttcggtaagtaaaaatacc gattttctggttgctggagaaaaggcaggctctaaattgacgaaggcccaagagttagac gttgaggtgtgggatgaagccaaacttattgcttttctcgcagaaaatgagaaatga

All links   Gene (2) NCBI-PROTEINID (1) OC (1) Protein domain (13) Pfam (13) All databases (15) Download RDF

DBGET integrated database retrieval system