KEGG   Azospirillum sp. TSH100: E6C72_09275
Entry
E6C72_09275       CDS       T09516                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
azs  Azospirillum sp. TSH100
Pathway
azs03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:azs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    E6C72_09275 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:azs03400]
    E6C72_09275 (mfd)
Enzymes [BR:azs01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     E6C72_09275 (mfd)
DNA repair and recombination proteins [BR:azs03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      E6C72_09275 (mfd)
SSDB
Motif
Pfam: TRCF DEAD Helicase_C UvrB_inter CarD_TRCF_RID ResIII Cas3-like_C_2 MFD_D3 SecA_DEAD AAA_16 UB2H RecG_dom3_C AAA_22
Other DBs
NCBI-ProteinID: QCG87895
Position
1:complement(1952287..1955928)
AA seq 1213 aa
MVSYDLQPGRAGRLLIGGAPEGHDARILAELAQKAGGYGLLHVALDDTRCALLAEALAFF
APRLEVLTFPAWDCLPYDRVSPNGGIVARRIDTLTRLIARRDAAANRDGLAPLIVLTTVN
AVVQKVPPRSAFKNAVFSAKIRDRIDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIIDL
FPPGTEEPLRLDLFGDELEGVRAFDPMTQRTTDKRDSVELKPMSEVFLDETGIARFRSGY
RELFGAVTDDDPLYEAISAGRSYGGMEHWLPLFHESMDTVLDYLPRGIVSLDHQASEARD
ARIAQVVDFHASRDGMMTIEKRAGSPVYKPVPVASMFLDATGWDALLAERAVAQLQIFST
PPGIKGTVDAGGKRGHDFAEERNRPDVNVFDAVKDHIRALRADGRRVLIAGYSAGSRDRL
SNVLADHGIPGLEPAENMDDVRRFDRGVIGTIVLGMEHGFTSADLAVITEQDILGDRLVR
PAKKKRKAANFIAEHSALHEGDIVVHMDHGIGRYDGLETLEVTGAPHDCLRLIYEGGDKL
YVPVENIEVLSRYGSEDANVQLDKLGGAGWQGRKARVKKRLKDMAEALLKIAAERMLKKA
DPVLTPEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGRPMDRLVCGDVGFGKTEVALR
AAFMVAMSGKQVAVVVPTTLLARQHFRTFSTRFNGLPVRVVQLSRMVTAREQTLVKKELA
EGTADIVVGTHALLAKGLDFKRLGMVIVDEEQHFGVKQKERLKELRADIHVLTLTATPIP
RTLQMALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQTFYVCPRIE
DLAKVAERVRELVPEVKIVTAHGQMPAGELEDVMTAFDEGKFEVLLATNIIESGLDIPNA
NTLIVHRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAPNKPLNATAQQRLHVIETLDSLG
AGFQLASHDMDIRGAGNLLGEEQSGQVREVGVELYQQMLEEAVANARASMQEGAIAAAAA
QEWVPQINLGTPVLIPESYVTDLTVRLSLYRRIADLVDRAEVDGFAAELIDRFGKLPEEV
ENLLDVVTIKRWCKQANIDRVDAGPKGLVLAFHDNFYAEPAKLLTYIAQHLTLMKLRPDH
KLVYVREWPDPQARVRSVQKLVKDLAEMASGGSVPRGETPPPPPPPPPPKPTGAKIASRF
GTPSRFGRPTGRR
NT seq 3642 nt   +upstreamnt  +downstreamnt
ttggtcagttacgatctccagcccggccgcgccggccgtctcctgatcggcggcgcgccc
gaggggcatgacgcccgcatcctggcggagcttgcgcagaaggccggcggctacggcctg
ctgcatgtggcgctggacgacacgcgctgcgccctgctggcggaggcgctggccttcttc
gcaccgaggctggaggtgctgaccttcccggcctgggactgcctgccctatgaccgggta
tcgccgaacggcggcatcgtcgcccggcgcatcgacacgctgacccggctgatcgcaaga
cgcgatgcggcggccaaccgcgacgggctggcgccgctgatcgtgctgaccacggtcaac
gccgtggtgcagaaggtgccaccgcgcagcgccttcaagaacgcagtgttctcggccaag
attcgcgaccgcatcgacctggagaagctgcaacgctacctcgccggcaacggctacacc
cgtgcccagacagtgcgggaaccgggcgagttcgccgtgcgcggcggcatcatcgacctg
ttcccgccggggacggaggagccgctgcgcctcgacctgttcggcgacgagctggagggc
gtgcgcgccttcgatccgatgacccagcgaaccaccgacaaacgcgacagcgtcgagctg
aagccgatgtcggaggtcttcctcgacgagaccgggatcgcccgcttccgctccggctat
cgcgagctgttcggggcggtgaccgacgacgacccgctctatgaagcgatttccgccggg
cggagctatggcgggatggagcattggctgccgctgttccatgagagcatggacacggtg
ctggactatctgccgcgcggcatcgtcagcctggaccatcaggccagcgaggcgcgcgac
gcccgcatcgcccaggtggtcgacttccacgcctcgcgcgacggcatgatgaccatcgag
aagcgggccggttcgccggtctacaagccggtgccggtcgcctcgatgttcctcgacgcc
accggctgggatgcgctgctggcggagcgcgcggtggcacaactccagattttctccacg
ccacccggcatcaagggcacggtggatgccggcggcaagcgcggccacgatttcgccgag
gagcgcaaccgccccgacgtgaatgtcttcgacgcggtgaaggatcatatccgcgcgctg
cgcgccgacgggcggcgcgtgctgatcgccggctattccgccggatcgcgcgaccgcctg
tccaacgtgctggccgaccatggtatccccggcctggagccggcggagaacatggatgac
gtccgccgcttcgaccgcggcgtgatcggcaccatcgtgctggggatggagcatggcttc
acctccgccgacctcgccgtcatcaccgaacaggacatcctcggcgaccgtctggtccgc
ccggccaagaagaagcgcaaggccgccaacttcatcgccgagcattcggccctgcatgaa
ggcgacatcgtcgtccacatggatcacggcatcggccgctatgacgggctggaaacgctg
gaggtaaccggcgcgccgcacgactgcctgcgcctcatctacgaaggcggcgacaagctg
tatgtcccggtcgagaacatcgaagttctgtcccgctacggctcggaggacgccaatgtc
cagctcgacaagctgggcggcgccggctggcagggccgcaaggcgcgggtcaagaagcgc
ctgaaggacatggcggaagccctgctgaagattgcggcggagcggatgctgaagaaggcc
gatcctgtgctgacgccggagggtgtctatcaggaattcgccgcccgcttcccctacccc
gagaccgacgaccagttgaaggccatcgaggacatcttcaccgacctcggcagcggccgg
ccgatggaccggctggtctgcggcgacgtcggcttcggcaagaccgaggtggcgctgcgc
gccgccttcatggtggcgatgagcggcaagcaggtcgccgtcgtcgtgccgaccaccctg
ctcgcccgccagcatttccgcaccttctcgacccggttcaacgggctgccggtgcgtgtc
gtgcaactgtcgcgcatggtcaccgcccgggaacagacgctggtgaagaaggaactggcg
gagggcacggccgacatcgtcgtcggcacccatgccctgctcgccaaggggctcgacttc
aagcggctcgggatggtcatcgtcgacgaggagcagcatttcggcgtgaagcagaaggaa
cgcctcaaggagctgcgcgccgacatccacgtcctgacgctgaccgccaccccgatcccg
cgcacgctccagatggcgctgtccggcgttcgcgagctgtcgctgatcgccaccccgccg
gtcgaccggcttgcggtgcgcaccttcgttctgccctatgacccggtggtgatccgcgag
gcgatcctgcgcgagcattaccgcggcggtcagaccttctatgtctgcccgcgcatcgag
gatctggcgaaggtggccgagcgggtgcgcgagctggtgccggaggtcaagatcgtcacc
gcccacggccagatgccggccggcgagctggaagacgtcatgaccgccttcgacgagggc
aagttcgaggttctgctcgccaccaacatcatcgaaagcggcctggacattcccaacgcc
aacacgctgatcgtccaccgcgccgacctgttcgggctggcccagctctaccagatccgc
ggccgcgtcggccggtcgaagaagcgcggctacgcctatctgacctacgcgccgaacaag
ccgctgaacgccaccgcccagcagcgcctacatgtcatcgagacactggacagcctgggc
gccggcttccagctcgccagccacgacatggacatccgcggcgccggcaatctgctgggc
gaggagcagtcgggtcaggtacgcgaggtcggtgtcgaactgtaccagcagatgctggag
gaggccgtcgccaacgcccgggcatccatgcaggagggcgccatcgcagccgccgcggcg
caggagtgggtgccgcagatcaacctgggcacgccggtgctgatcccggaaagctatgtc
accgacctgacggtgcggctgtcgctgtaccgtcgcatcgccgatctggtcgaccgcgcc
gaggtggacggcttcgccgccgagttgatcgaccgcttcggcaagctgccggaggaggtc
gagaacctgctggacgtcgtcaccatcaagcgctggtgcaaacaggccaacatcgaccgc
gtcgatgccgggccgaaggggctggtgctggccttccacgataatttctatgccgagcca
gccaagctgctgacctatatcgcccagcacctgacgctgatgaagctgcggccggaccac
aagctggtctatgttcgcgaatggcccgatccgcaggcccgcgtgcgcagcgtgcagaag
ctggtcaaggatctggcggagatggcgtcgggcggcagcgtgccgcgcggcgaaacccca
ccgccgccgcctcccccgccgccgcccaaaccgaccggcgcgaagatcgcctcacgcttc
ggcacgccatcacgcttcggccgcccgaccggacggcgctga

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein domain (13)   
   Pfam (13)   
All databases (14)   

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