KEGG   Brassica rapa (field mustard): 103831421
Entry
103831421         CDS       T03449                                 
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22 homolog
  KO
K13100  pre-mRNA-splicing factor CWC22
Organism
brp  Brassica rapa (field mustard)
Brite
KEGG Orthology (KO) [BR:brp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:brp03041]
    103831421
Spliceosome [BR:brp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    103831421
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    103831421
SSDB
Motif
Pfam: MA3 MIF4G HEAT_GCN1_C HEAT_5MP1_2 MMS19_C
Other DBs
NCBI-GeneID: 103831421
NCBI-ProteinID: XP_033131643
Position
A07:complement(19956716..19959870)
AA seq 548 aa
MGRHDGSSEEDERVRRSDRERGHRGSSTRVTADKPSHDRQKSRRESERKQGLLKRDRRER
DWSDSQRGKLRKEVKSEVAKPKLPELNPSDSNAIALGKTGGVYIPPFKLARMMKEVEDKS
SVEYQXGLVNKVNASNIKNIIPELFAENLIXCRSCMKSQMASPGFTDVFAALVAVINAKF
PEVAELLLKRVVLQLKRAYKRNDKPQRLAAVKFIAHLVNQQVPEETIALELVSVLLETPT
DDSVEVAVGFVTECGAMLQDVTPKGLHGSKINVVIXFCDASSEEDGSDEEEDEEQMRIRD
ETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRY
YGLLGQRFCMINNFEKCFVQXYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLT
EEDTTSSSRIFIKILFQELSEHLGIRLLNERLQDPTMQESLESIFPKDNPKNTRFAINFF
TSIGLGGIXREYLKNMPRLIMQQQKQVAESESGSDSSGSESDSDSDSSSSSSSSDESDRE
KRKPRRRF
NT seq 1647 nt   +upstreamnt  +downstreamnt
atgggtaggcacgatggttcctccgaggaagacgagagagtgagaagaagtgatagagag
agaggtcataggggtagtagtactagagtcacagctgataagccttctcatgataggcaa
aagagtaggagagaaagcgagaggaaacaaggtctcttaaagagagatcggagggagaga
gactggtctgatagtcaaagaggcaagctgagaaaggaagttaagagtgaagttgcgaag
cccaagttgccagaactcaacccatctgatagcaatgctatagctttgggtaaaaccggt
ggagtttatatccctccgttcaagctagcacggatgatgaaggaggtggaggacaagagc
agcgtagagtatcagnncgggctggtgaataaggttaacgcaagcaacatcaagaacatt
atacctgagttgtttgctgagaatctcatcnactgccgttcgtgtatgaagtctcagatg
gcgtctcctgggtttaccgatgtctttgcagctttggtcgctgttatcaacgccaagttc
ccagaagttgctgagcttttgttgaaaagggtcgttttgcagctgaagagagcttataag
cgtaacgacaagcctcaacggctagctgcggtgaagtttatagcacatctagtaaaccag
caagtccctgaggagaccattgcccttgaactagtctctgtacttttagaaacccctact
gatgacagtgtggaggtggctgttggattcgtgacagagtgtggtgccatgctccaggac
gttacaccaaagggattgcatggttcaaagataaacgttgtgatatgattctgtgatgct
agctcagaggaagatgggtctgatgaagaagaagatgaagaacaaatgagaattagagac
gagacagagactaatcttgttaatcttaggaggacaatatacctgaccataatgtccagc
gtcgattttgaggaagctggtcacaagttacttaaaattaaactcgaaccaggtcaagag
atggaactgtgcataatgctcctggaatgttgctctcaggagagaacctatctgcgctac
tacggtttgttgggtcagcgtttctgtatgatcaacaatttcgagaagtgtttcgttcag
tagtactctatgattcaccgtcttgaaacgaacaagctgcgtaacgtggctaagtttttt
gcacatttactgggcacagatgctcttccctggcatgtgcttgcctacattcggttaacc
gaggaggatacaacttcatcctctcgtatcttcattaagatccttttccaggaattgtca
gagcacttggggattaggctgcttaatgagaggcttcaggatccaacaatgcaggaatca
cttgaatccatcttccctaaagacaatccaaagaacactaggtttgcaatcaacttcttt
acctccattggtcttggaggcatcnacagagagtatctgaagaacatgccacgcctcatc
atgcaacaacagaagcaagttgctgaatcagaatcaggatccgacagttctggttccgag
tctgattctgactcagattcatcgtcatcttcttctagttctgatgaaagcgacagagag
aagaggaagccaagaagaagattttaa

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (10)   

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